Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:22:01 -0400 (Wed, 16 Oct 2019).
Package 430/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
DFP 1.42.0 Rodrigo Alvarez-Glez
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: DFP |
Version: 1.42.0 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DFP.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings DFP_1.42.0.tar.gz |
StartedAt: 2019-10-16 03:13:56 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 03:14:55 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 59.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DFP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DFP.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings DFP_1.42.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/DFP.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'DFP/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'DFP' version '1.42.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'DFP' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'Biobase' which was already attached by Depends. Please remove these calls from your code. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plotDiscriminantFuzzyPattern: warning in matrix(x, nr = ly, nc = lx, byrow = TRUE): partial argument match of 'nr' to 'nrow' plotDiscriminantFuzzyPattern: warning in matrix(x, nr = ly, nc = lx, byrow = TRUE): partial argument match of 'nc' to 'ncol' plotDiscriminantFuzzyPattern: warning in matrix(y, nr = ly, nc = lx): partial argument match of 'nr' to 'nrow' plotDiscriminantFuzzyPattern: warning in matrix(y, nr = ly, nc = lx): partial argument match of 'nc' to 'ncol' .plotGeneMF: no visible global function definition for 'curve' .plotGeneMF: no visible binding for global variable 'x' .plotGeneMF: no visible global function definition for 'abline' .plotGeneMF: no visible global function definition for 'palette' .plotGeneMF: no visible global function definition for 'rainbow' .plotGeneMF: no visible global function definition for 'legend' calculateFuzzyPatterns: no visible global function definition for 'head' discretizeExpressionValues: no visible global function definition for 'head' discriminantFuzzyPattern: no visible global function definition for 'head' plotDiscriminantFuzzyPattern: no visible global function definition for 'image' plotDiscriminantFuzzyPattern: no visible global function definition for 'par' plotDiscriminantFuzzyPattern: no visible global function definition for 'axis' plotDiscriminantFuzzyPattern: no visible global function definition for 'text' plotMembershipFunctions: no visible global function definition for 'par' readCSV: no visible global function definition for 'read.table' readCSV: no visible global function definition for 'head' Undefined global functions or variables: abline axis curve head image legend palette par rainbow read.table text x Consider adding importFrom("grDevices", "palette", "rainbow") importFrom("graphics", "abline", "axis", "curve", "image", "legend", "par", "text") importFrom("utils", "head", "read.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/DFP.Rcheck/00check.log' for details.
DFP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DFP_1.42.0.tar.gz && rm -rf DFP.buildbin-libdir && mkdir DFP.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DFP.buildbin-libdir DFP_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DFP_1.42.0.zip && rm DFP_1.42.0.tar.gz DFP_1.42.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 210k 100 210k 0 0 1351k 0 --:--:-- --:--:-- --:--:-- 1422k install for i386 * installing *source* package 'DFP' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DFP' finding HTML links ... done DFP-internal html DFP-package html ExpressionLevel-class html HighExpressionLevel-class html LowExpressionLevel-class html MediumExpressionLevel-class html calculateDiscriminantFuzzyPattern html calculateFuzzyPatterns html calculateMembershipFunctions html discretizeExpressionValues html discriminantFuzzyPattern html plotDiscriminantFuzzyPattern html plotMembershipFunctions html readCSV html rmadataset html show-methods html showDiscreteValues html showFuzzyPatterns html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'DFP' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'DFP' as DFP_1.42.0.zip * DONE (DFP) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'DFP' successfully unpacked and MD5 sums checked
DFP.Rcheck/examples_i386/DFP-Ex.timings
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DFP.Rcheck/examples_x64/DFP-Ex.timings
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