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This page was generated on 2019-10-16 12:36:11 -0400 (Wed, 16 Oct 2019).
Package 383/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CytoML 1.10.0 Mike Jiang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: CytoML |
Version: 1.10.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CytoML_1.10.0.tar.gz && rm -rf CytoML.buildbin-libdir && mkdir CytoML.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CytoML.buildbin-libdir CytoML_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CytoML_1.10.0.zip && rm CytoML_1.10.0.tar.gz CytoML_1.10.0.zip |
StartedAt: 2019-10-15 20:42:47 -0400 (Tue, 15 Oct 2019) |
EndedAt: 2019-10-15 20:45:14 -0400 (Tue, 15 Oct 2019) |
EllapsedTime: 147.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CytoML_1.10.0.tar.gz && rm -rf CytoML.buildbin-libdir && mkdir CytoML.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CytoML.buildbin-libdir CytoML_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CytoML_1.10.0.zip && rm CytoML_1.10.0.tar.gz CytoML_1.10.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 6140k 100 6140k 0 0 51.4M 0 --:--:-- --:--:-- --:--:-- 55.0M install for i386 * installing *source* package 'CytoML' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -DROUT -I../inst/include/ -Ic:/libxml2//i386/include/libxml2 -DLIBXML_STATIC -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o In file included from ../inst/include/flowWorkspace/openWorkspace.hpp:12:0, from ../inst/include/CytoML.h:5, from RcppExports.cpp:4: ../inst/include/flowWorkspace/winFlowJoWorkspace.hpp:433:30: warning: "/*" within comment [-Wcomment] * "*[local-name()='edge']/*[local-name()='vertex']" is for ellipsoidGate ^ In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0, from ../inst/include/flowWorkspace/wsNode.hpp:10, from ../inst/include/flowWorkspace/workspace.hpp:14, from ../inst/include/flowWorkspace/flowJoWorkspace.hpp:11, from ../inst/include/flowWorkspace/macFlowJoWorkspace.hpp:10, from ../inst/include/flowWorkspace/openWorkspace.hpp:11, from ../inst/include/CytoML.h:5, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vectorBOOLINDICES::getIndices_u()': C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < x.size(); i++){ ^ C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector ROOTINDICES::getIndices_u()': C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < nEvents; i++) ^ In file included from ../inst/include/flowWorkspace/flowJoWorkspace.hpp:11:0, from ../inst/include/flowWorkspace/macFlowJoWorkspace.hpp:10, from ../inst/include/flowWorkspace/openWorkspace.hpp:11, from ../inst/include/CytoML.h:5, from RcppExports.cpp:4: ../inst/include/flowWorkspace/workspace.hpp: In member function 'void workspace::toArray(std::string, std::vector &, std::vector &)': ../inst/include/flowWorkspace/workspace.hpp:108:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned i=0;i BOOLINDICES::getIndices_u()': C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < x.size(); i++){ ^ C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector ROOTINDICES::getIndices_u()': C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < nEvents; i++) ^ In file included from ../inst/include/flowWorkspace/flowJoWorkspace.hpp:11:0, from ../inst/include/flowWorkspace/macFlowJoWorkspace.hpp:10, from ../inst/include/flowWorkspace/openWorkspace.hpp:11, from parseFlowJoWorkspace.cpp:10: ../inst/include/flowWorkspace/workspace.hpp: In member function 'void workspace::toArray(std::string, std::vector &, std::vector &)': ../inst/include/flowWorkspace/workspace.hpp:108:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned i=0;i BOOLINDICES::getIndices_u()': C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < x.size(); i++){ ^ C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector ROOTINDICES::getIndices_u()': C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < nEvents; i++) ^ In file included from ../inst/include/flowWorkspace/flowJoWorkspace.hpp:11:0, from ../inst/include/flowWorkspace/macFlowJoWorkspace.hpp:10, from ../inst/include/flowWorkspace/openWorkspace.hpp:11, from ../inst/include/CytoML.h:5, from RcppExports.cpp:4: ../inst/include/flowWorkspace/workspace.hpp: In member function 'void workspace::toArray(std::string, std::vector &, std::vector &)': ../inst/include/flowWorkspace/workspace.hpp:108:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned i=0;i BOOLINDICES::getIndices_u()': C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < x.size(); i++){ ^ C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector ROOTINDICES::getIndices_u()': C:/Users/biocbuild/bbs-3.9-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(auto i = 0; i < nEvents; i++) ^ In file included from ../inst/include/flowWorkspace/flowJoWorkspace.hpp:11:0, from ../inst/include/flowWorkspace/macFlowJoWorkspace.hpp:10, from ../inst/include/flowWorkspace/openWorkspace.hpp:11, from parseFlowJoWorkspace.cpp:10: ../inst/include/flowWorkspace/workspace.hpp: In member function 'void workspace::toArray(std::string, std::vector &, std::vector &)': ../inst/include/flowWorkspace/workspace.hpp:108:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(unsigned i=0;i