Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

INSTALL report for survtype on tokay2

This page was generated on 2019-10-16 12:43:53 -0400 (Wed, 16 Oct 2019).

Package 1611/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
survtype 1.0.0
Dongmin Jung
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/survtype
Branch: RELEASE_3_9
Last Commit: 9608fc4
Last Changed Date: 2019-05-02 11:54:15 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: survtype
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/survtype_1.0.0.tar.gz && rm -rf survtype.buildbin-libdir && mkdir survtype.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=survtype.buildbin-libdir survtype_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL survtype_1.0.0.zip && rm survtype_1.0.0.tar.gz survtype_1.0.0.zip
StartedAt: 2019-10-15 20:45:59 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:46:43 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 44.3 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/survtype_1.0.0.tar.gz && rm -rf survtype.buildbin-libdir && mkdir survtype.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=survtype.buildbin-libdir survtype_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL survtype_1.0.0.zip && rm survtype_1.0.0.tar.gz survtype_1.0.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  9676  100  9676    0     0   142k      0 --:--:-- --:--:-- --:--:--  157k

install for i386

* installing *source* package 'survtype' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'survtype'
    finding HTML links ... done
    Exprs.survtype                          html  
    MAF.survgroup                           html  
    Single.survgroup                        html  
    Surv.survtype                           html  
    gene.clust                              html  
    maf2matrix                              html  
    plot.survtype                           html  
    quantile_normalization                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'survtype' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'survtype' as survtype_1.0.0.zip
* DONE (survtype)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'survtype' successfully unpacked and MD5 sums checked