Juliane Siebourg
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/staRank |
| Branch: RELEASE_3_9 |
| Last Commit: eed8d7a |
| Last Changed Date: 2019-05-02 11:53:36 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:26:31 -0400 (Wed, 16 Oct 2019).
| Package 1593/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| staRank 1.26.0 Juliane Siebourg
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: staRank |
| Version: 1.26.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:staRank.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings staRank_1.26.0.tar.gz |
| StartedAt: 2019-10-16 07:22:39 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 07:26:06 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 207.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: staRank.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:staRank.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings staRank_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/staRank.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'staRank/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'staRank' version '1.26.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'staRank' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE OPIScore :: no visible global function definition for 'phyper' aggregRank : : no visible global function definition for 'median' mwTest2samp: no visible global function definition for 'pwilcox' mwTest2samp: no visible global function definition for 'pnorm' show,RankSummary: no visible global function definition for 'head' stabilityRanking,cellHTS: no visible global function definition for 'channelNames' stabilityRanking,cellHTS: no visible global function definition for 'sampleNames' stabilityRanking,cellHTS: no visible global function definition for 'featureNames' stabilityRanking,numeric: no visible global function definition for 'avrgRank<-' stabilityRanking,numeric: no visible global function definition for 'cor' summaryStats,list : : no visible global function definition for 'median' summaryStats,list : : no visible global function definition for 't.test' summaryStats,matrix : : no visible global function definition for 'median' summaryStats,matrix : : no visible global function definition for 't.test' Undefined global functions or variables: avrgRank<- channelNames cor featureNames head median phyper pnorm pwilcox sampleNames t.test Consider adding importFrom("stats", "cor", "median", "phyper", "pnorm", "pwilcox", "t.test") importFrom("utils", "head") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/staRank.Rcheck/00check.log' for details.
staRank.Rcheck/00install.out
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/staRank_1.26.0.tar.gz && rm -rf staRank.buildbin-libdir && mkdir staRank.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=staRank.buildbin-libdir staRank_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL staRank_1.26.0.zip && rm staRank_1.26.0.tar.gz staRank_1.26.0.zip
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install for i386
* installing *source* package 'staRank' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'staRank'
finding HTML links ... done
Pi-methods html
RankSummary-class html
aggregRank html
avrgRank-methods html
baseRank-methods html
dataFormatRSA html
getRankmatrix html
getSampleScores-methods html
getStability html
method-methods html
mwTest2samp html
rankCor-methods html
runRSA html
salmonellaInfection html
salmonellaStability html
show-methods html
staRank-package html
stabRank-methods html
stabilityRanking-methods html
stableSetSize-methods html
summary-methods html
summaryStats-methods html
uniqueRSARanking html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'staRank' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'staRank' as staRank_1.26.0.zip
* DONE (staRank)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'staRank' successfully unpacked and MD5 sums checked
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staRank.Rcheck/examples_i386/staRank-Ex.timings
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staRank.Rcheck/examples_x64/staRank-Ex.timings
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