Davis McCarthy
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/slalom |
| Branch: RELEASE_3_9 |
| Last Commit: 70a9755 |
| Last Changed Date: 2019-05-02 11:54:09 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:39:38 -0400 (Wed, 16 Oct 2019).
| Package 1538/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| slalom 1.6.0 Davis McCarthy
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: slalom |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/slalom_1.6.0.tar.gz && rm -rf slalom.buildbin-libdir && mkdir slalom.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=slalom.buildbin-libdir slalom_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL slalom_1.6.0.zip && rm slalom_1.6.0.tar.gz slalom_1.6.0.zip |
| StartedAt: 2019-10-15 20:13:53 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:15:58 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 125.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/slalom_1.6.0.tar.gz && rm -rf slalom.buildbin-libdir && mkdir slalom.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=slalom.buildbin-libdir slalom_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL slalom_1.6.0.zip && rm slalom_1.6.0.tar.gz slalom_1.6.0.zip
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install for i386
* installing *source* package 'slalom' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c slalom-classes.cpp -o slalom-classes.o
slalom-classes.cpp: In member function 'void SlalomModel::train()':
slalom-classes.cpp:223:20: warning: unused variable 'meanerr' [-Wunused-variable]
double meanerr = arma::mean(error);
^
slalom-classes.cpp:202:12: warning: unused variable 'meanerr' [-Wunused-variable]
double meanerr = arma::mean(error);
^
slalom-classes.cpp: In member function 'void SlalomModel::updateEpsilon()':
slalom-classes.cpp:431:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < this->epsilon_E1.n_elem; i++) {
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o slalom.dll tmp.def RcppExports.o slalom-classes.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/slalom.buildbin-libdir/00LOCK-slalom/00new/slalom/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'slalom'
finding HTML links ... done
Rcpp_SlalomModel html
SlalomModel html
addResultsToSingleCellExperiment html
initSlalom html
mesc html
newSlalomModel html
plotLoadings html
plotRelevance html
plotTerms html
slalom html
topTerms html
trainSlalom html
updateSlalom html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'slalom' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c slalom-classes.cpp -o slalom-classes.o
slalom-classes.cpp: In member function 'void SlalomModel::train()':
slalom-classes.cpp:223:20: warning: unused variable 'meanerr' [-Wunused-variable]
double meanerr = arma::mean(error);
^
slalom-classes.cpp:202:12: warning: unused variable 'meanerr' [-Wunused-variable]
double meanerr = arma::mean(error);
^
slalom-classes.cpp: In member function 'void SlalomModel::updateEpsilon()':
slalom-classes.cpp:431:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < this->epsilon_E1.n_elem; i++) {
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o slalom.dll tmp.def RcppExports.o slalom-classes.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/slalom.buildbin-libdir/slalom/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'slalom' as slalom_1.6.0.zip
* DONE (slalom)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'slalom' successfully unpacked and MD5 sums checked