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INSTALL report for sesame on tokay2

This page was generated on 2019-10-16 12:41:48 -0400 (Wed, 16 Oct 2019).

Package 1503/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sesame 1.2.0
Wanding Zhou
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/sesame
Branch: RELEASE_3_9
Last Commit: 1b9bddf
Last Changed Date: 2019-05-02 11:54:12 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: sesame
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sesame_1.2.0.tar.gz && rm -rf sesame.buildbin-libdir && mkdir sesame.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sesame.buildbin-libdir sesame_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sesame_1.2.0.zip && rm sesame_1.2.0.tar.gz sesame_1.2.0.zip
StartedAt: 2019-10-15 20:17:23 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:20:41 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 197.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sesame_1.2.0.tar.gz && rm -rf sesame.buildbin-libdir && mkdir sesame.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sesame.buildbin-libdir sesame_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sesame_1.2.0.zip && rm sesame_1.2.0.tar.gz sesame_1.2.0.zip
###
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  0   97k    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   97k  100   97k    0     0  1612k      0 --:--:-- --:--:-- --:--:-- 1775k

install for i386

* installing *source* package 'sesame' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sesame'
    finding HTML links ... done
    BetaValueToMValue                       html  
    IG-methods                              html  
    IG-replace-methods                      html  
    II-methods                              html  
    II-replace-methods                      html  
    IR-methods                              html  
    IR-replace-methods                      html  
    MValueToBetaValue                       html  
    RGChannelSetToSigSets                   html  
    SNPcheck                                html  
    SigSet-class                            html  
    SigSetList-class                        html  
    SigSetList-methods                      html  
    SigSetList                              html  
    SigSetListFromIDATs                     html  
    SigSetListFromPath                      html  
    SigSetToRatioSet                        html  
    SigSetsToRGChannelSet                   html  
    SignalSet                               html  
    finding level-2 HTML links ... done

    as.data.frame.sesameQC                  html  
    binSignals                              html  
    bisConversionControl                    html  
    buildControlMatrix450k                  html  
    chipAddressToSignal                     html  
    cnSegmentation                          html  
    ctl-methods                             html  
    ctl-replace-methods                     html  
    detectionPfixedNorm                     html  
    detectionPnegEcdf                       html  
    detectionPnegNorm                       html  
    detectionPnegNormGS                     html  
    detectionPnegNormTotal                  html  
    detectionPoobEcdf                       html  
    detectionZero                           html  
    diffRefSet                              html  
    dyeBiasCorr                             html  
    dyeBiasCorrMostBalanced                 html  
    dyeBiasCorrTypeINorm                    html  
    estimateCellComposition                 html  
    estimateLeukocyte                       html  
    getAFTypeIbySumAlleles                  html  
    getBetas                                html  
    getBinCoordinates                       html  
    getNormCtls                             html  
    getProbesByGene                         html  
    getProbesByRegion                       html  
    getProbesByTSS                          html  
    getRefSet                               html  
    getSexInfo                              html  
    inferEthnicity                          html  
    inferSex                                html  
    inferSexKaryotypes                      html  
    inferTypeIChannel                       html  
    initFileSet                             html  
    makeExampleSeSAMeDataSet                html  
    makeExampleTinyEPICDataSet              html  
    mapFileSet                              html  
    meanIntensity                           html  
    noob                                    html  
    noobsb                                  html  
    oobG-methods                            html  
    oobG-replace-methods                    html  
    oobR-methods                            html  
    oobR-replace-methods                    html  
    openSesame                              html  
    openSesameToFile                        html  
    parseGEOSignalABFile                    html  
    predictAgeHorvath353                    html  
    predictAgePheno                         html  
    predictAgeSkinBlood                     html  
    print.fileSet                           html  
    print.sesameQC                          html  
    probeNames-methods                      html  
    pval-methods                            html  
    pval-replace-methods                    html  
    readFileSet                             html  
    readIDATpair                            html  
    reopenSesame                            html  
    searchIDATprefixes                      html  
    segmentBins                             html  
    sesame-package                          html  
    sesameQC                                html  
    sesamize                                html  
    show-methods                            html  
    signalR6toS4                            html  
    sliceFileSet                            html  
    subsetSignal                            html  
    totalIntensities                        html  
    totalIntensityZscore                    html  
    visualizeGene                           html  
    visualizeProbes                         html  
    visualizeRegion                         html  
    visualizeSegments                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sesame' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sesame' as sesame_1.2.0.zip
* DONE (sesame)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'sesame' successfully unpacked and MD5 sums checked