Michael Cole
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/scone |
| Branch: RELEASE_3_9 |
| Last Commit: 4d72c47 |
| Last Changed Date: 2019-05-02 11:54:04 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:37:28 -0400 (Wed, 16 Oct 2019).
| Package 1473/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| scone 1.8.0 Michael Cole
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: scone |
| Version: 1.8.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/scone_1.8.0.tar.gz && rm -rf scone.buildbin-libdir && mkdir scone.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scone.buildbin-libdir scone_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL scone_1.8.0.zip && rm scone_1.8.0.tar.gz scone_1.8.0.zip |
| StartedAt: 2019-10-15 21:09:49 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 21:11:07 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 77.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/scone_1.8.0.tar.gz && rm -rf scone.buildbin-libdir && mkdir scone.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scone.buildbin-libdir scone_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL scone_1.8.0.zip && rm scone_1.8.0.tar.gz scone_1.8.0.zip
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install for i386
* installing *source* package 'scone' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'scone'
finding HTML links ... done
CLR_FN html
DESEQ_FN html
FQ_FN html
SCRAN_FN html
SUM_FN html
SconeExperiment-class html
finding level-2 HTML links ... done
TMM_FN html
UQ_FN html
biplot_color html
biplot_interactive html
control_genes html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpW6nKJt/R.INSTALL1ca02c4b3dd8/scone/man/control_genes.Rd:28: file link 'toupper' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpW6nKJt/R.INSTALL1ca02c4b3dd8/scone/man/control_genes.Rd:29: file link 'tolower' in package 'base' does not exist and so has been treated as a topic
estimate_ziber html
factor_sample_filter html
fast_estimate_ziber html
get_bio html
get_design html
get_negconruv html
get_normalized html
get_params html
get_qc html
get_scores html
impute_expectation html
impute_null html
lm_adjust html
make_design html
metric_sample_filter html
scone html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpW6nKJt/R.INSTALL1ca02c4b3dd8/scone/man/scone.Rd:101: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
sconeReport html
scone_easybake html
score_matrix html
select_methods html
simple_FNR_params html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'scone' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scone' as scone_1.8.0.zip
* DONE (scone)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'scone' successfully unpacked and MD5 sums checked