Jitao David Zhang
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/rqubic |
| Branch: RELEASE_3_9 |
| Last Commit: 0088dce |
| Last Changed Date: 2019-05-02 11:53:28 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:25:33 -0400 (Wed, 16 Oct 2019).
| Package 1417/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| rqubic 1.30.0 Jitao David Zhang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: rqubic |
| Version: 1.30.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/rqubic_1.30.0.tar.gz && rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rqubic.buildbin-libdir rqubic_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL rqubic_1.30.0.zip && rm rqubic_1.30.0.tar.gz rqubic_1.30.0.zip |
| StartedAt: 2019-10-15 19:09:06 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:09:58 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 51.7 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/rqubic_1.30.0.tar.gz && rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rqubic.buildbin-libdir rqubic_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL rqubic_1.30.0.zip && rm rqubic_1.30.0.tar.gz rqubic_1.30.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 74284 100 74284 0 0 572k 0 --:--:-- --:--:-- --:--:-- 604k
install for i386
* installing *source* package 'rqubic' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c bicluster.c -o bicluster.o
bicluster.c: In function 'seed_intersect_r':
bicluster.c:354:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (flag=ss) (*m_cnt)++;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c discretize.c -o discretize.o
In file included from discretize.c:9:0:
rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^
rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c fib.c -o fib.o
In file included from fib.c:35:0:
rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^
rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c graph.c -o graph.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c rqubic.c -o rqubic.o
In file included from rqubic.c:5:0:
rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^
rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o rqubic.dll tmp.def bicluster.o discretize.o fib.o graph.o rqubic.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/rqubic.buildbin-libdir/00LOCK-rqubic/00new/rqubic/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'rqubic'
finding HTML links ... done
QUBICBiclusterSet-class html
finding level-2 HTML links ... done
combineBiclusts-methods html
discretize html
eSetDimName html
fcFilter-methods html
fcFilter html
features-methods html
generateSeeds-methods html
parseQubicBlocks html
quBicluster html
readBiclusterResults html
rqubic-package html
writeQubicInputFile html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'rqubic' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c bicluster.c -o bicluster.o
bicluster.c: In function 'seed_intersect_r':
bicluster.c:354:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (flag=ss) (*m_cnt)++;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c discretize.c -o discretize.o
In file included from discretize.c:9:0:
rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^
rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c fib.c -o fib.o
In file included from fib.c:35:0:
rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^
rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c graph.c -o graph.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c rqubic.c -o rqubic.o
In file included from rqubic.c:5:0:
rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^
rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o rqubic.dll tmp.def bicluster.o discretize.o fib.o graph.o rqubic.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/rqubic.buildbin-libdir/rqubic/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rqubic' as rqubic_1.30.0.zip
* DONE (rqubic)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'rqubic' successfully unpacked and MD5 sums checked