Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 11:56:58 -0400 (Wed, 16 Oct 2019).
Package 1071/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
multiscan 1.44.0 Mizanur Khondoker
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: multiscan |
Version: 1.44.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:multiscan.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings multiscan_1.44.0.tar.gz |
StartedAt: 2019-10-16 03:26:54 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 03:27:32 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 37.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: multiscan.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:multiscan.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings multiscan_1.44.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/multiscan.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘multiscan/DESCRIPTION’ ... OK * this is package ‘multiscan’ version ‘1.44.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘multiscan’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE File ‘multiscan/R/zzz.R’: .onAttach calls: cat(paste("*** Loaded multiscan Version", packageDescription("multiscan")$Version), "*** \n") cat("Type 'vignette(\"multiscan\")' to view the package vignette.\n") Package startup functions should use ‘packageStartupMessage’ to generate messages. See section ‘Good practice’ in '?.onAttach'. multiscan: no visible global function definition for ‘na.omit’ multiscan: no visible global function definition for ‘na.fail’ multiscan: no visible binding for global variable ‘median’ plot.multiscan: no visible global function definition for ‘par’ plot.multiscan: no visible global function definition for ‘plot’ plot.multiscan: no visible global function definition for ‘points’ plot.multiscan: no visible global function definition for ‘lines’ plot.multiscan: no visible global function definition for ‘legend’ plot.multiscan: no visible global function definition for ‘dev.interactive’ plot.multiscan: no visible global function definition for ‘abline’ Undefined global functions or variables: abline dev.interactive legend lines median na.fail na.omit par plot points Consider adding importFrom("grDevices", "dev.interactive") importFrom("graphics", "abline", "legend", "lines", "par", "plot", "points") importFrom("stats", "median", "na.fail", "na.omit") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.9-bioc/meat/multiscan.Rcheck/00check.log’ for details.
multiscan.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL multiscan ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘multiscan’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c multiscan.c -o multiscan.o gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o multiscan.so multiscan.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-multiscan/00new/multiscan/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location *** Loaded multiscan Version 1.44.0 *** Type 'vignette("multiscan")' to view the package vignette. ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location *** Loaded multiscan Version 1.44.0 *** Type 'vignette("multiscan")' to view the package vignette. ** testing if installed package keeps a record of temporary installation path * DONE (multiscan)
multiscan.Rcheck/multiscan-Ex.timings
name | user | system | elapsed | |
multiscan | 3.923 | 0.012 | 3.957 | |
plot.multiscan | 2.004 | 0.020 | 2.026 | |