Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:48:45 -0400 (Wed, 16 Oct 2019).
Package 783/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ibh 1.32.0 Kircicegi Korkmaz
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: ibh |
Version: 1.32.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ibh.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ibh_1.32.0.tar.gz |
StartedAt: 2019-10-16 03:44:22 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 03:44:51 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 29.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ibh.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ibh.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ibh_1.32.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/ibh.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ibh/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ibh’ version ‘1.32.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ibh’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: ‘simpIntLists’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ibhBioGRID: no visible global function definition for ‘findInteractionList’ ibhForMultipleGeneListsBioGRID: no visible global function definition for ‘findInteractionList’ readDirectedInteractionsFromCsv: no visible global function definition for ‘read.csv’ readUndirectedInteractionsFromCsv: no visible global function definition for ‘read.csv’ Undefined global functions or variables: findInteractionList read.csv Consider adding importFrom("utils", "read.csv") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.9-bioc/meat/ibh.Rcheck/00check.log’ for details.
ibh.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ibh ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘ibh’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ibh)
ibh.Rcheck/ibh-Ex.timings
name | user | system | elapsed | |
findEntry | 0.020 | 0.003 | 0.026 | |
ibh-package | 1.734 | 0.160 | 1.902 | |
ibh | 0.008 | 0.001 | 0.010 | |
ibhBioGRID | 0.215 | 0.005 | 0.220 | |
ibhClusterEval | 0.384 | 0.018 | 0.402 | |
ibhClusterEvalBioGRID | 0.784 | 0.033 | 0.817 | |
ibhForMultipleGeneLists | 0.017 | 0.003 | 0.020 | |
ibhForMultipleGeneListsBioGRID | 0.327 | 0.015 | 0.342 | |
readDirectedInteractionsFromCsv | 0 | 0 | 0 | |
readUndirectedInteractionsFromCsv | 0.001 | 0.000 | 0.001 | |