Greg Imholte
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/iBMQ |
| Branch: RELEASE_3_9 |
| Last Commit: 92c7ad8 |
| Last Changed Date: 2019-05-02 11:53:39 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:27:18 -0400 (Wed, 16 Oct 2019).
| Package 784/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| iBMQ 1.24.0 Greg Imholte
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | ...NOT SUPPORTED... | ||||||||||
| Package: iBMQ |
| Version: 1.24.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/iBMQ_1.24.0.tar.gz && rm -rf iBMQ.buildbin-libdir && mkdir iBMQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iBMQ.buildbin-libdir iBMQ_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL iBMQ_1.24.0.zip && rm iBMQ_1.24.0.tar.gz iBMQ_1.24.0.zip |
| StartedAt: 2019-10-15 19:06:32 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:07:15 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 43.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/iBMQ_1.24.0.tar.gz && rm -rf iBMQ.buildbin-libdir && mkdir iBMQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iBMQ.buildbin-libdir iBMQ_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL iBMQ_1.24.0.zip && rm iBMQ_1.24.0.tar.gz iBMQ_1.24.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3798k 100 3798k 0 0 30.5M 0 --:--:-- --:--:-- --:--:-- 32.5M
install for i386
* installing *source* package 'iBMQ' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ARS.c -o ARS.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c RngStream.c -o RngStream.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c iBMQ_common.c -o iBMQ_common.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c main_parallel_sparse.c -o main_parallel_sparse.o
main_parallel_sparse.c: In function 'iBMQ_main':
main_parallel_sparse.c:289:3: warning: 'Cfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Cfile);
^
main_parallel_sparse.c:288:3: warning: 'Sig2file' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Sig2file);
^
main_parallel_sparse.c:287:3: warning: 'Mufile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Mufile);
^
main_parallel_sparse.c:285:3: warning: 'Bfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Bfile);
^
main_parallel_sparse.c:284:3: warning: 'Afile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Afile);
^
main_parallel_sparse.c:286:3: warning: 'Pfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Pfile);
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c norm_gamma_generation.c -o norm_gamma_generation.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sparse.c -o sparse.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o iBMQ.dll tmp.def ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/i386/lib -lgsl -lgslcblas -lm -fopenmp -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/iBMQ.buildbin-libdir/00LOCK-iBMQ/00new/iBMQ/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'iBMQ'
finding HTML links ... done
PPA.liver html
calculateThreshold html
eqtlClassifier html
eqtlFinder html
eqtlMcmc html
gene html
genepos html
genotype.liver html
hotspotFinder html
iBMQ-package html
map.liver html
phenotype.liver html
probe.liver html
snp html
snppos html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'iBMQ' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ARS.c -o ARS.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c RngStream.c -o RngStream.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c iBMQ_common.c -o iBMQ_common.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c main_parallel_sparse.c -o main_parallel_sparse.o
main_parallel_sparse.c: In function 'iBMQ_main':
main_parallel_sparse.c:289:3: warning: 'Cfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Cfile);
^
main_parallel_sparse.c:288:3: warning: 'Sig2file' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Sig2file);
^
main_parallel_sparse.c:287:3: warning: 'Mufile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Mufile);
^
main_parallel_sparse.c:285:3: warning: 'Bfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Bfile);
^
main_parallel_sparse.c:284:3: warning: 'Afile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Afile);
^
main_parallel_sparse.c:286:3: warning: 'Pfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Pfile);
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c norm_gamma_generation.c -o norm_gamma_generation.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sparse.c -o sparse.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o iBMQ.dll tmp.def ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/x64/lib -lgsl -lgslcblas -lm -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/iBMQ.buildbin-libdir/iBMQ/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iBMQ' as iBMQ_1.24.0.zip
* DONE (iBMQ)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'iBMQ' successfully unpacked and MD5 sums checked