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INSTALL report for genomeIntervals on tokay2

This page was generated on 2019-10-16 12:22:27 -0400 (Wed, 16 Oct 2019).

Package 652/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genomeIntervals 1.40.0
Julien Gagneur
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/genomeIntervals
Branch: RELEASE_3_9
Last Commit: 2f4755b
Last Changed Date: 2019-05-02 11:53:11 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: genomeIntervals
Version: 1.40.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/genomeIntervals_1.40.0.tar.gz && rm -rf genomeIntervals.buildbin-libdir && mkdir genomeIntervals.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genomeIntervals.buildbin-libdir genomeIntervals_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL genomeIntervals_1.40.0.zip && rm genomeIntervals_1.40.0.tar.gz genomeIntervals_1.40.0.zip
StartedAt: 2019-10-15 19:59:46 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:00:23 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 37.3 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/genomeIntervals_1.40.0.tar.gz && rm -rf genomeIntervals.buildbin-libdir && mkdir genomeIntervals.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genomeIntervals.buildbin-libdir genomeIntervals_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL genomeIntervals_1.40.0.zip && rm genomeIntervals_1.40.0.tar.gz genomeIntervals_1.40.0.zip
###
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install for i386

* installing *source* package 'genomeIntervals' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'genomeIntervals'
    finding HTML links ... done
    GenomeIntervals-constructor             html  
    Genome_intervals-class                  html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwvqB4i/R.INSTALL1894722f3990/genomeIntervals/man/Genome_intervals-class.Rd:110: file link 'width' in package 'IRanges' does not exist and so has been treated as a topic
    Genome_intervals-coercion-methods       html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwvqB4i/R.INSTALL1894722f3990/genomeIntervals/man/Genome_intervals-coercion-methods.Rd:49: file link 'readGff3' in package 'genomeIntervals' does not exist and so has been treated as a topic
    Genome_intervals-deprecated             html  
    Genome_intervals-ordering               html  
    Genome_intervals_stranded-class         html  
    c.Genome_intervals                      html  
    core_annotated                          html  
    distance_to_nearest-methods             html  
    gen_ints                                html  
    genomeIntervals-package                 html  
    genomeIntervals-readGff3                html  
    getGffAttribute                         html  
    interval_overlap-methods                html  
    interval_set_operations-methods         html  
    parseGffAttributes                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'genomeIntervals' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genomeIntervals' as genomeIntervals_1.40.0.zip
* DONE (genomeIntervals)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'genomeIntervals' successfully unpacked and MD5 sums checked