Charlotte Soneson
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/compcodeR |
| Branch: RELEASE_3_9 |
| Last Commit: 9f60a50 |
| Last Changed Date: 2019-07-31 11:25:40 -0400 (Wed, 31 Jul 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:29:53 -0400 (Wed, 16 Oct 2019).
| Package 328/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| compcodeR 1.20.1 Charlotte Soneson
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: compcodeR |
| Version: 1.20.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/compcodeR_1.20.1.tar.gz && rm -rf compcodeR.buildbin-libdir && mkdir compcodeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=compcodeR.buildbin-libdir compcodeR_1.20.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL compcodeR_1.20.1.zip && rm compcodeR_1.20.1.tar.gz compcodeR_1.20.1.zip |
| StartedAt: 2019-10-15 19:24:34 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:25:45 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 71.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/compcodeR_1.20.1.tar.gz && rm -rf compcodeR.buildbin-libdir && mkdir compcodeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=compcodeR.buildbin-libdir compcodeR_1.20.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL compcodeR_1.20.1.zip && rm compcodeR_1.20.1.tar.gz compcodeR_1.20.1.zip
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install for i386
* installing *source* package 'compcodeR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'compcodeR'
finding HTML links ... done
DESeq.GLM.createRmd html
DESeq.nbinom.createRmd html
DESeq2.createRmd html
DSS.createRmd html
EBSeq.createRmd html
NBPSeq.createRmd html
NOISeq.prenorm.createRmd html
TCC.createRmd html
baySeq.createRmd html
checkDataObject html
checkTableConsistency html
check_compData html
check_compData_results html
compData-class html
compData html
compcodeR-package html
convertListTocompData html
convertcompDataToList html
edgeR.GLM.createRmd html
edgeR.exact.createRmd html
generateCodeHTMLs html
generateSyntheticData html
listcreateRmd html
logcpm.limma.createRmd html
runComparison html
runComparisonGUI html
runDiffExp html
show-compData-method html
sqrtcpm.limma.createRmd html
summarizeSyntheticDataSet html
ttest.createRmd html
voom.limma.createRmd html
voom.ttest.createRmd html
vst.limma.createRmd html
vst.ttest.createRmd html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'compcodeR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'compcodeR' as compcodeR_1.20.1.zip
* DONE (compcodeR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'compcodeR' successfully unpacked and MD5 sums checked