Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:45:45 -0400 (Wed, 16 Oct 2019).
Package 317/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
codelink 1.52.0 Diego Diez
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: codelink |
Version: 1.52.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:codelink.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings codelink_1.52.0.tar.gz |
StartedAt: 2019-10-16 01:38:53 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 01:41:43 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 170.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: codelink.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:codelink.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings codelink_1.52.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/codelink.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘codelink/DESCRIPTION’ ... OK * this is package ‘codelink’ version ‘1.52.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘codelink’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
codelink.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL codelink ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘codelink’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘Codelink_Introduction.Rnw’ using ‘UTF-8’ ‘Codelink_Legacy.Rnw’ using ‘UTF-8’ ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (codelink)
codelink.Rcheck/codelink-Ex.timings
name | user | system | elapsed | |
Codelink-class | 0 | 0 | 0 | |
CodelinkSet-class | 0.000 | 0.001 | 0.001 | |
CodelinkSetUnique-class | 0.001 | 0.000 | 0.000 | |
arrayNew | 0 | 0 | 0 | |
as.matrix.Codelink | 0.000 | 0.001 | 0.001 | |
averageProbes | 0.001 | 0.001 | 0.000 | |
bkgdCorrect | 0.61 | 0.07 | 0.68 | |
createWeights | 0.924 | 0.050 | 0.975 | |
cutCV | 0.001 | 0.000 | 0.000 | |
dim.Codelink | 0.000 | 0.001 | 0.000 | |
imageCodelink | 0 | 0 | 0 | |
logCodelink | 0.000 | 0.000 | 0.001 | |
mergeArray | 0.001 | 0.000 | 0.001 | |
na2false | 0.000 | 0.001 | 0.000 | |
normalize | 1.119 | 0.128 | 1.248 | |
plotCorrelation | 0.000 | 0.000 | 0.001 | |
plotDensities | 0 | 0 | 0 | |
plotMA | 0.000 | 0.000 | 0.001 | |
readCodelink | 0.001 | 0.001 | 0.001 | |
readHeader | 0.001 | 0.001 | 0.001 | |
readHeaderXLS | 0.000 | 0.001 | 0.000 | |
writeCodelink | 0.000 | 0.001 | 0.001 | |