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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/bgx_1.50.0.tar.gz && rm -rf bgx.buildbin-libdir && mkdir bgx.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bgx.buildbin-libdir bgx_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL bgx_1.50.0.zip && rm bgx_1.50.0.tar.gz bgx_1.50.0.zip
###
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install for i386
* installing *source* package 'bgx' ...
** using staged installation
Untarring Boost header files...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I ../boostIncl -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mtune=generic -c bgx.cc -o bgx.o
In file included from ../boostIncl/boost/config.hpp:57:0,
from ../boostIncl/boost/random/linear_congruential.hpp:22,
from ../boostIncl/boost/random.hpp:36,
from rand.hh:32,
from bgx.cc:32:
../boostIncl/boost/random/detail/const_mod.hpp: In static member function 'static IntType boost::random::const_mod::invert_euclidian(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_148' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/detail/const_mod.hpp:148:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(m > 0);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_152' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/detail/const_mod.hpp:152:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(boost::integer_traits::is_signed);
^
../boostIncl/boost/random/linear_congruential.hpp: In constructor 'boost::random::linear_congruential::linear_congruential(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_63' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_congruential.hpp:63:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/random/inversive_congruential.hpp: In constructor 'boost::random::inversive_congruential::inversive_congruential(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_50' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/inversive_congruential.hpp:50:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(b >= 0);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_51' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/inversive_congruential.hpp:51:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(p > 1);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_52' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/inversive_congruential.hpp:52:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(a >= 1);
^
../boostIncl/boost/random/shuffle_output.hpp: In member function 'void boost::random::shuffle_output::init()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_124' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/shuffle_output.hpp:124:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/random/mersenne_twister.hpp: In member function 'void boost::random::mersenne_twister::seed(Generator&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_99' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/mersenne_twister.hpp:99:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed);
^
../boostIncl/boost/random/subtract_with_carry.hpp: In constructor 'boost::random::subtract_with_carry::subtract_with_carry()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_83' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/subtract_with_carry.hpp:83:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_signed);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_84' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/subtract_with_carry.hpp:84:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift::linear_feedback_shift(UIntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_55' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:55:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_56' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:56:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed);
^
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift::linear_feedback_shift(It&, It)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_70' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:70:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed);
^
../boostIncl/boost/random/xor_combine.hpp: In member function 'boost::random::xor_combine::result_type boost::random::xor_combine::operator()()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_67' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/xor_combine.hpp:67:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_68' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/xor_combine.hpp:68:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/xor_combine.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::digits >= std::numeric_limits::digits);
^
../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::detail::uniform_smallint_float::uniform_smallint_float(boost::detail::uniform_smallint_float::base_type&, IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_121' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_smallint.hpp:121:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_122' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_smallint.hpp:122:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer);
^
../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::uniform_smallint::uniform_smallint(IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_170' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_smallint.hpp:170:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/random/uniform_int.hpp: In constructor 'boost::uniform_int::uniform_int(IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_47' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_int.hpp:47:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/random/random_number_generator.hpp: In constructor 'boost::random_number_generator::random_number_generator(boost::random_number_generator::base_type&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/random_number_generator.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/random/uniform_real.hpp: In constructor 'boost::uniform_real::uniform_real(RealType, RealType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_41' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_real.hpp:41:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer);
^
../boostIncl/boost/random/poisson_distribution.hpp: In constructor 'boost::poisson_distribution::poisson_distribution(const RealType&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/poisson_distribution.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_39' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/poisson_distribution.hpp:39:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer);
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I ../boostIncl -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mtune=generic -c bgx_frontend.cc -o bgx_frontend.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I ../boostIncl -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -std=c99 -O3 -Wall -std=gnu99 -mtune=generic -c qnorm.c -o qnorm.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I ../boostIncl -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mtune=generic -c rundir.cc -o rundir.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I ../boostIncl -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mtune=generic -c sokal.cc -o sokal.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o bgx.dll tmp.def bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/bgx.buildbin-libdir/00LOCK-bgx/00new/bgx/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'bgx'
finding HTML links ... done
analysis.bgx html
bgx html
mcmc.bgx html
readOutput.bgx html
saveAffinityPlot.bgx html
setupVars.bgx html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'bgx' ...
Untarring Boost header files...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I ../boostIncl -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mtune=generic -c bgx.cc -o bgx.o
In file included from ../boostIncl/boost/config.hpp:57:0,
from ../boostIncl/boost/random/linear_congruential.hpp:22,
from ../boostIncl/boost/random.hpp:36,
from rand.hh:32,
from bgx.cc:32:
../boostIncl/boost/random/detail/const_mod.hpp: In static member function 'static IntType boost::random::const_mod::invert_euclidian(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_148' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/detail/const_mod.hpp:148:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(m > 0);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_152' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/detail/const_mod.hpp:152:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(boost::integer_traits::is_signed);
^
../boostIncl/boost/random/linear_congruential.hpp: In constructor 'boost::random::linear_congruential::linear_congruential(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_63' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_congruential.hpp:63:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/random/inversive_congruential.hpp: In constructor 'boost::random::inversive_congruential::inversive_congruential(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_50' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/inversive_congruential.hpp:50:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(b >= 0);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_51' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/inversive_congruential.hpp:51:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(p > 1);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_52' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/inversive_congruential.hpp:52:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(a >= 1);
^
../boostIncl/boost/random/shuffle_output.hpp: In member function 'void boost::random::shuffle_output::init()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_124' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/shuffle_output.hpp:124:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/random/mersenne_twister.hpp: In member function 'void boost::random::mersenne_twister::seed(Generator&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_99' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/mersenne_twister.hpp:99:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed);
^
../boostIncl/boost/random/subtract_with_carry.hpp: In constructor 'boost::random::subtract_with_carry::subtract_with_carry()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_83' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/subtract_with_carry.hpp:83:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_signed);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_84' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/subtract_with_carry.hpp:84:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift::linear_feedback_shift(UIntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_55' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:55:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_56' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:56:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed);
^
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift::linear_feedback_shift(It&, It)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_70' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/linear_feedback_shift.hpp:70:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed);
^
../boostIncl/boost/random/xor_combine.hpp: In member function 'boost::random::xor_combine::result_type boost::random::xor_combine::operator()()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_67' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/xor_combine.hpp:67:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_68' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/xor_combine.hpp:68:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/xor_combine.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::digits >= std::numeric_limits::digits);
^
../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::detail::uniform_smallint_float::uniform_smallint_float(boost::detail::uniform_smallint_float::base_type&, IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_121' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_smallint.hpp:121:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_122' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_smallint.hpp:122:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer);
^
../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::uniform_smallint::uniform_smallint(IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_170' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_smallint.hpp:170:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/random/uniform_int.hpp: In constructor 'boost::uniform_int::uniform_int(IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_47' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_int.hpp:47:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/random/random_number_generator.hpp: In constructor 'boost::random_number_generator::random_number_generator(boost::random_number_generator::base_type&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/random_number_generator.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/random/uniform_real.hpp: In constructor 'boost::uniform_real::uniform_real(RealType, RealType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_41' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/uniform_real.hpp:41:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer);
^
../boostIncl/boost/random/poisson_distribution.hpp: In constructor 'boost::poisson_distribution::poisson_distribution(const RealType&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/poisson_distribution.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(std::numeric_limits::is_integer);
^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_39' locally defined but not used [-Wunused-local-typedefs]
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
#define BOOST_DO_JOIN2( X, Y ) X##Y
^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
#define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
^
../boostIncl/boost/random/poisson_distribution.hpp:39:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer);
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I ../boostIncl -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mtune=generic -c bgx_frontend.cc -o bgx_frontend.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I ../boostIncl -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -std=c99 -O2 -Wall -std=gnu99 -mtune=generic -c qnorm.c -o qnorm.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I ../boostIncl -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mtune=generic -c rundir.cc -o rundir.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I ../boostIncl -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mtune=generic -c sokal.cc -o sokal.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o bgx.dll tmp.def bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/bgx.buildbin-libdir/bgx/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bgx' as bgx_1.50.0.zip
* DONE (bgx)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'bgx' successfully unpacked and MD5 sums checked
