YAPSA 1.10.0
Daniel Huebschmann
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/YAPSA |
| Branch: RELEASE_3_9 |
| Last Commit: 06af18e |
| Last Changed Date: 2019-05-02 11:54:03 -0400 (Thu, 02 May 2019) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data YAPSA
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* checking for file ‘YAPSA/DESCRIPTION’ ... OK
* preparing ‘YAPSA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘YAPSA.Rmd’ using rmarkdown
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: ggplot2
Loading required package: grid
Registered S3 method overwritten by 'GGally':
method from
+.gg ggplot2
Registered S3 methods overwritten by 'proxy':
method from
print.registry_field registry
print.registry_entry registry
Warning in has_utility("convert", "ImageMagick") :
ImageMagick not installed or not in PATH
Loading required package: BSgenome
Loading required package: Biostrings
Loading required package: XVector
Attaching package: 'Biostrings'
The following object is masked from 'package:base':
strsplit
Loading required package: rtracklayer
Warning in posthoc.kruskal.nemenyi.test.default(x = sig_exposures_vector, :
Ties are present, p-values are not corrected.
Warning in posthoc.kruskal.nemenyi.test.default(x = sig_exposures_vector, :
Ties are present, p-values are not corrected.
Warning in posthoc.kruskal.nemenyi.test.default(x = sig_exposures_vector, :
Ties are present, p-values are not corrected.
Warning in posthoc.kruskal.nemenyi.test.default(x = sig_exposures_vector, :
Ties are present, p-values are not corrected.
Warning in posthoc.kruskal.nemenyi.test.default(x = sig_exposures_vector, :
Ties are present, p-values are not corrected.
Warning in posthoc.kruskal.nemenyi.test.default(x = sig_exposures_vector, :
Ties are present, p-values are not corrected.
Error parsing references: Could not read as Int: "August"
Error running filter /usr/local/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'YAPSA.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘YAPSA.Rmd’
SUMMARY: processing the following file failed:
‘YAPSA.Rmd’
Error: Vignette re-building failed.
Execution halted