Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:34:16 -0400 (Wed, 16 Oct 2019).
Package 1534/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
SISPA 1.14.0 Bhakti Dwivedi
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: SISPA |
Version: 1.14.0 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SISPA.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings SISPA_1.14.0.tar.gz |
StartedAt: 2019-10-16 07:11:36 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 07:14:35 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 179.9 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: SISPA.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SISPA.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings SISPA_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/SISPA.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'SISPA/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'SISPA' version '1.14.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SISPA' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE cptSamples : cptsPlot: no visible global function definition for 'abline' cptSamples : cptsPlot: no visible global function definition for 'text' Undefined global functions or variables: abline text Consider adding importFrom("graphics", "abline", "text") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': 'SISPA.Rmd', 'SISPA.md', 'SISPA_data.Rda', 'SISPA_files/figure-html/unnamed-chunk-2-1.png', 'SISPA_files/figure-html/unnamed-chunk-3-1.png', 'SISPA_files/figure-html/unnamed-chunk-4-1.png', 'SISPA_files/figure-html/unnamed-chunk-5-1.png', 'SISPA_files/figure-html/unnamed-chunk-6-1.png', 'SISPA_files/figure-html/unnamed-chunk-7-1.png', 'sispa_overview.png' Files named as vignettes but with no recognized vignette engine: 'vignettes/SISPA.Rmd' (Is a VignetteBuilder field missing?) * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/SISPA.Rcheck/00check.log' for details.
SISPA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SISPA_1.14.0.tar.gz && rm -rf SISPA.buildbin-libdir && mkdir SISPA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SISPA.buildbin-libdir SISPA_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SISPA_1.14.0.zip && rm SISPA_1.14.0.tar.gz SISPA_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 612k 100 612k 0 0 5282k 0 --:--:-- --:--:-- --:--:-- 5617k install for i386 * installing *source* package 'SISPA' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SISPA' finding HTML links ... done SISPA html callGSVA html callZSCORE html cptSamples html expression_data html filterVars html freqplot html sortData html variant_data html waterfallplot html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SISPA' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SISPA' as SISPA_1.14.0.zip * DONE (SISPA) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'SISPA' successfully unpacked and MD5 sums checked
SISPA.Rcheck/examples_i386/SISPA-Ex.timings
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SISPA.Rcheck/examples_x64/SISPA-Ex.timings
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