Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:32:29 -0400 (Wed, 16 Oct 2019).
Package 1484/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
SELEX 1.16.0 Harmen Bussemaker
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: SELEX |
Version: 1.16.0 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SELEX.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings SELEX_1.16.0.tar.gz |
StartedAt: 2019-10-16 06:59:15 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 07:02:27 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 191.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SELEX.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SELEX.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings SELEX_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/SELEX.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'SELEX/DESCRIPTION' ... OK * this is package 'SELEX' version '1.16.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SELEX' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE selex.config: no visible global function definition for 'read.table' selex.config: no visible global function definition for 'write.table' selex.counts: no visible global function definition for 'flush.console' selex.infogain: no visible global function definition for 'flush.console' selex.kmax: no visible global function definition for 'flush.console' selex.loadCountTable: no visible global function definition for 'flush.console' selex.mm: no visible global function definition for 'flush.console' selex.revcomp: no visible global function definition for 'complete.cases' Undefined global functions or variables: complete.cases flush.console read.table write.table Consider adding importFrom("stats", "complete.cases") importFrom("utils", "flush.console", "read.table", "write.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking files in 'vignettes' ... NOTE The following directory looks like a leftover from 'knitr': 'cache' Please remove from your package. * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed SELEX 11.74 6.14 19.45 selex.seqfilter 4.11 3.20 7.20 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed SELEX 34.12 5.55 16.47 selex.seqfilter 13.46 2.00 5.86 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/SELEX.Rcheck/00check.log' for details.
SELEX.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SELEX_1.16.0.tar.gz && rm -rf SELEX.buildbin-libdir && mkdir SELEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SELEX.buildbin-libdir SELEX_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SELEX_1.16.0.zip && rm SELEX_1.16.0.tar.gz SELEX_1.16.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1654k 100 1654k 0 0 6803k 0 --:--:-- --:--:-- --:--:-- 6979k install for i386 * installing *source* package 'SELEX' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SELEX' finding HTML links ... done SELEX html selex.affinities html selex.config html selex.countSummary html selex.counts html selex.defineSample html selex.exampledata html selex.fastqPSFM html selex.getAttributes html selex.getRound0 html selex.getSeqfilter html selex.infogain html selex.infogainSummary html selex.jvmStatus html selex.kmax html selex.kmerPSFM html selex.loadAnnotation html selex.mm html selex.mmProb html selex.mmSummary html selex.revcomp html selex.run html selex.sample html selex.samplePSFM html selex.sampleSummary html selex.saveAnnotation html selex.seqfilter html selex.setwd html selex.split html selex.summary html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SELEX' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SELEX' as SELEX_1.16.0.zip * DONE (SELEX) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'SELEX' successfully unpacked and MD5 sums checked
SELEX.Rcheck/examples_i386/SELEX-Ex.timings
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SELEX.Rcheck/examples_x64/SELEX-Ex.timings
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