Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:13:05 -0400 (Wed, 16 Oct 2019).
Package 1329/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RcisTarget 1.4.0 Sara Aibar
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: RcisTarget |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:RcisTarget.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings RcisTarget_1.4.0.tar.gz |
StartedAt: 2019-10-16 04:20:31 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 04:26:26 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 355.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RcisTarget.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:RcisTarget.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings RcisTarget_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/RcisTarget.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RcisTarget/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RcisTarget’ version ‘1.4.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RcisTarget’ can be installed ... OK * checking installed package size ... NOTE installed size is 6.5Mb sub-directories of 1Mb or more: data 4.4Mb doc 1.7Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed addMotifAnnotation 38.036 1.160 23.121 getMotifAnnotation 24.637 0.111 14.473 addSignificantGenes 21.966 0.743 21.452 aucScores-class 12.059 0.227 12.311 rankingRcisTarget-class 9.941 0.207 10.202 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.9-bioc/meat/RcisTarget.Rcheck/00check.log’ for details.
RcisTarget.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL RcisTarget ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘RcisTarget’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘RcisTarget.Rmd’ ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcisTarget)
RcisTarget.Rcheck/tests/testthat.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(RcisTarget) > > test_check("RcisTarget") ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 58 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 79.070 2.985 56.659
RcisTarget.Rcheck/RcisTarget-Ex.timings
name | user | system | elapsed | |
RcisTarget | 0.209 | 0.012 | 0.206 | |
addLogo | 0.191 | 0.004 | 0.203 | |
addMotifAnnotation | 38.036 | 1.160 | 23.121 | |
addSignificantGenes | 21.966 | 0.743 | 21.452 | |
aucScores-class | 12.059 | 0.227 | 12.311 | |
calcAUC | 0.000 | 0.000 | 0.001 | |
getMotifAnnotation | 24.637 | 0.111 | 14.473 | |
importAnnotations | 0.728 | 0.060 | 0.792 | |
importRankings | 0.789 | 0.028 | 0.819 | |
rankingRcisTarget-class | 9.941 | 0.207 | 10.202 | |