Paul Shannon
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/RCyjs |
| Branch: RELEASE_3_9 |
| Last Commit: 65a588a |
| Last Changed Date: 2019-05-02 11:53:54 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:55:32 -0400 (Wed, 16 Oct 2019).
| Package 1335/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RCyjs 2.6.0 Paul Shannon
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ WARNINGS ] | OK | |
| Package: RCyjs |
| Version: 2.6.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RCyjs.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RCyjs_2.6.0.tar.gz |
| StartedAt: 2019-10-16 06:05:30 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 06:06:33 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 63.7 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: RCyjs.Rcheck |
| Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RCyjs.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RCyjs_2.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/RCyjs.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RCyjs/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RCyjs’ version ‘2.6.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RCyjs’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in documentation object 'hideNodes,RCyjs-method' ‘nodeIDs’ Undocumented arguments in documentation object 'showNodes,RCyjs-method' ‘nodeIDs’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking include directives in Makefiles ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See ‘/Users/biocbuild/bbs-3.9-bioc/meat/RCyjs.Rcheck/00check.log’ for details.
RCyjs.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RCyjs ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘RCyjs’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘layout’ in package ‘RCyjs’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCyjs)
RCyjs.Rcheck/tests/runTests.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # disabled: the bioc build system no longer supports browser use.
> # BiocGenerics:::testPackage("RCyjs")
>
> proc.time()
user system elapsed
0.393 0.154 0.491
RCyjs.Rcheck/RCyjs-Ex.timings
| name | user | system | elapsed | |
| RCyjs-class | 0.002 | 0.000 | 0.002 | |
| addGraph | 0.001 | 0.000 | 0.001 | |
| addGraphFromFile | 0.000 | 0.000 | 0.001 | |
| clearSelection | 0.001 | 0.000 | 0.001 | |
| createTestGaph | 0.012 | 0.001 | 0.012 | |
| deleteGraph | 0.001 | 0.001 | 0.001 | |
| deleteSelectedNodes | 0.001 | 0.000 | 0.002 | |
| eda | 0.001 | 0.000 | 0.001 | |
| edaNames | 0.001 | 0.000 | 0.001 | |
| fit | 0.000 | 0.001 | 0.001 | |
| fitSelection | 0.000 | 0.000 | 0.001 | |
| getEdgeCount | 0.001 | 0.000 | 0.001 | |
| getJSON | 0.001 | 0.001 | 0.002 | |
| getLayoutStrategies | 0.001 | 0.001 | 0.001 | |
| getNodeCount | 0.001 | 0.001 | 0.001 | |
| getNodes | 0.001 | 0.000 | 0.001 | |
| getPosition | 0.001 | 0.000 | 0.001 | |
| getSelectedNodes | 0.001 | 0.000 | 0.001 | |
| getSupportedEdgeDecoratorShapes | 0.000 | 0.000 | 0.001 | |
| getSupportedNodeShapes | 0.001 | 0.000 | 0.001 | |
| getZoom | 0.001 | 0.001 | 0.001 | |
| hAlign | 0.001 | 0.001 | 0.001 | |
| hideAllEdges | 0.000 | 0.000 | 0.001 | |
| hideEdges | 0.001 | 0.000 | 0.001 | |
| hideNodes | 0.001 | 0.000 | 0.002 | |
| hideSelectedNodes | 0.001 | 0.000 | 0.001 | |
| invertNodeSelection | 0.000 | 0.000 | 0.001 | |
| layout | 0.001 | 0.000 | 0.001 | |
| layoutSelectionInGrid | 0.002 | 0.000 | 0.002 | |
| layoutSelectionInGridInferAnchorm | 0.001 | 0.000 | 0.002 | |
| loadStyleFile | 0.001 | 0.001 | 0.001 | |
| noa | 0.001 | 0.000 | 0.001 | |
| noaNames | 0 | 0 | 0 | |
| redraw | 0.001 | 0.001 | 0.001 | |
| restoreLayout | 0.001 | 0.000 | 0.001 | |
| saveJPG | 0.001 | 0.000 | 0.002 | |
| saveLayout | 0.000 | 0.000 | 0.001 | |
| savePNG | 0.001 | 0.001 | 0.002 | |
| selectFirstNeighborsOfSelectedNodes | 0.001 | 0.001 | 0.002 | |
| selectNodes | 0.001 | 0.000 | 0.001 | |
| setBackgroundColor | 0.001 | 0.000 | 0.001 | |
| setDefaultEdgeColor | 0.001 | 0.000 | 0.001 | |
| setDefaultEdgeLineColor | 0.001 | 0.000 | 0.001 | |
| setDefaultEdgeLineStyle | 0.001 | 0.001 | 0.001 | |
| setDefaultEdgeSourceArrowColor | 0.001 | 0.000 | 0.001 | |
| setDefaultEdgeSourceArrowShape | 0 | 0 | 0 | |
| setDefaultEdgeTargetArrowColor | 0.000 | 0.001 | 0.001 | |
| setDefaultEdgeTargetArrowShape | 0.000 | 0.001 | 0.001 | |
| setDefaultEdgeWidth | 0.001 | 0.000 | 0.001 | |
| setDefaultNodeBorderColor | 0.001 | 0.000 | 0.001 | |
| setDefaultNodeBorderWidth | 0.001 | 0.000 | 0.001 | |
| setDefaultNodeColor | 0.001 | 0.000 | 0.001 | |
| setDefaultNodeFontColor | 0.000 | 0.000 | 0.001 | |
| setDefaultNodeFontSize | 0.001 | 0.001 | 0.001 | |
| setDefaultNodeHeight | 0.001 | 0.000 | 0.001 | |
| setDefaultNodeShape | 0.000 | 0.000 | 0.001 | |
| setDefaultNodeSize | 0.000 | 0.000 | 0.001 | |
| setDefaultNodeWidth | 0.000 | 0.001 | 0.001 | |
| setDefaultStyle | 0.000 | 0.001 | 0.001 | |
| setEdgeStyle | 0.001 | 0.000 | 0.001 | |
| setGraph | 0.001 | 0.000 | 0.001 | |
| setNodeAttributes | 0.001 | 0.000 | 0.001 | |
| setNodeBorderColor | 0.001 | 0.001 | 0.001 | |
| setNodeBorderWidth | 0.000 | 0.000 | 0.001 | |
| setNodeColor | 0.000 | 0.000 | 0.001 | |
| setNodeColorRule | 0.002 | 0.001 | 0.001 | |
| setNodeFontColor | 0.001 | 0.001 | 0.001 | |
| setNodeFontSize | 0.001 | 0.000 | 0.001 | |
| setNodeHeight | 0.001 | 0.000 | 0.001 | |
| setNodeLabelRule | 0.000 | 0.000 | 0.002 | |
| setNodeShape | 0.001 | 0.000 | 0.001 | |
| setNodeSize | 0.001 | 0.001 | 0.001 | |
| setNodeSizeRule | 0.001 | 0.001 | 0.002 | |
| setNodeWidth | 0.001 | 0.001 | 0.001 | |
| setPosition | 0.001 | 0.000 | 0.001 | |
| setZoom | 0.001 | 0.000 | 0.001 | |
| sfn | 0.001 | 0.000 | 0.001 | |
| showAll | 0.001 | 0.000 | 0.002 | |
| showEdges | 0.001 | 0.001 | 0.001 | |
| showNodes | 0.001 | 0.001 | 0.002 | |
| simpleDemoGraph | 0.098 | 0.002 | 0.099 | |
| vAlign | 0.001 | 0.000 | 0.002 | |