Klara Kaleb
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/OmaDB |
| Branch: RELEASE_3_9 |
| Last Commit: f310294 |
| Last Changed Date: 2019-05-02 11:54:09 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:40:04 -0400 (Wed, 16 Oct 2019).
| Package 1127/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| OmaDB 2.0.0 Klara Kaleb
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: OmaDB |
| Version: 2.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/OmaDB_2.0.0.tar.gz && rm -rf OmaDB.buildbin-libdir && mkdir OmaDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmaDB.buildbin-libdir OmaDB_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL OmaDB_2.0.0.zip && rm OmaDB_2.0.0.tar.gz OmaDB_2.0.0.zip |
| StartedAt: 2019-10-15 20:00:56 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:01:56 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 60.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/OmaDB_2.0.0.tar.gz && rm -rf OmaDB.buildbin-libdir && mkdir OmaDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmaDB.buildbin-libdir OmaDB_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL OmaDB_2.0.0.zip && rm OmaDB_2.0.0.tar.gz OmaDB_2.0.0.zip
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install for i386
* installing *source* package 'OmaDB' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'OmaDB'
finding HTML links ... done
OmaDB-deprecated html
OmaDB-package html
annotateSequence html
cash-.omadb_obj html
formatTopGO html
getAnnotation-deprecated html
getAttribute html
getData-deprecated html
getGenome html
getGenomeAlignment-deprecated html
getGenomePairs html
getHOG html
getLocus html
getOMAGroup html
getObjectAttributes html
getProtein html
getTaxonomy html
getTopGO html
getTree html
getVersion html
getXref-deprecated html
group html
hog html
mapSequence html
orthologs html
pairs html
protein html
resolveURL html
searchProtein html
sequence_annotation html
sequence_map html
setAPI html
taxonomy html
xref html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'OmaDB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OmaDB' as OmaDB_2.0.0.zip
* DONE (OmaDB)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'OmaDB' successfully unpacked and MD5 sums checked