Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:04:37 -0400 (Wed, 16 Oct 2019).
Package 1037/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
MoPS 1.18.0 Philipp Eser
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: MoPS |
Version: 1.18.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:MoPS.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings MoPS_1.18.0.tar.gz |
StartedAt: 2019-10-16 03:19:08 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 03:19:52 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 43.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MoPS.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:MoPS.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings MoPS_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/MoPS.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MoPS/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MoPS’ version ‘1.18.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MoPS’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE fit.periodic: no visible global function definition for ‘lm’ fit.periodic: no visible global function definition for ‘cor’ fun.lognormal: no visible global function definition for ‘dlnorm’ fun.lognormal.psi: no visible global function definition for ‘dlnorm’ makewave: no visible global function definition for ‘integrate’ pathfunction: no visible global function definition for ‘approxfun’ Undefined global functions or variables: approxfun cor dlnorm integrate lm Consider adding importFrom("stats", "approxfun", "cor", "dlnorm", "integrate", "lm") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed predictTimecourses 7.352 0.003 7.357 fit.periodic 5.734 0.005 5.738 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.9-bioc/meat/MoPS.Rcheck/00check.log’ for details.
MoPS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL MoPS ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘MoPS’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MoPS)
MoPS.Rcheck/MoPS-Ex.timings
name | user | system | elapsed | |
fit.periodic | 5.734 | 0.005 | 5.738 | |
predictTimecourses | 7.352 | 0.003 | 7.357 | |
result.as.dataframe | 1.106 | 0.004 | 1.110 | |