Zicheng Hu
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/MetaCyto |
| Branch: RELEASE_3_9 |
| Last Commit: ffb6981 |
| Last Changed Date: 2019-05-02 11:54:09 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:39:56 -0400 (Wed, 16 Oct 2019).
| Package 960/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MetaCyto 1.6.0 Zicheng Hu
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: MetaCyto |
| Version: 1.6.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MetaCyto.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings MetaCyto_1.6.0.tar.gz |
| StartedAt: 2019-10-16 05:04:15 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 05:15:26 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 670.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MetaCyto.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MetaCyto.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings MetaCyto_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/MetaCyto.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'MetaCyto/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MetaCyto' version '1.6.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MetaCyto' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE collectData: no visible binding for global variable 'parameter_name' collectData: no visible binding for global variable 'value' panelSummary: no visible binding for global variable 'antibodies' panelSummary: no visible binding for global variable 'value' plotGA: no visible binding for global variable 'lower' plotGA: no visible binding for global variable 'upper' searchCluster :: no visible binding for global variable 'triS' Undefined global functions or variables: antibodies lower parameter_name triS upper value * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed autoCluster.batch 78.12 29.19 109.35 labelCluster 64.95 19.45 84.40 searchCluster.batch 19.29 6.63 26.14 flowSOM.MC 16.74 0.20 16.94 clusterStats 6.41 2.11 8.51 densityPlot 6.17 2.30 8.46 searchCluster 6.12 2.09 8.22 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed autoCluster.batch 76.05 34.67 110.79 labelCluster 59.64 21.78 81.53 searchCluster.batch 17.59 7.57 25.40 flowSOM.MC 13.26 0.08 13.35 searchCluster 6.41 2.68 9.08 densityPlot 5.66 2.61 8.26 clusterStats 5.50 2.56 8.08 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/MetaCyto.Rcheck/00check.log' for details.
MetaCyto.Rcheck/00install.out
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### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/MetaCyto_1.6.0.tar.gz && rm -rf MetaCyto.buildbin-libdir && mkdir MetaCyto.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MetaCyto.buildbin-libdir MetaCyto_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL MetaCyto_1.6.0.zip && rm MetaCyto_1.6.0.tar.gz MetaCyto_1.6.0.zip
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install for i386
* installing *source* package 'MetaCyto' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MetaCyto'
finding HTML links ... done
autoCluster.batch html
clusterStats html
collectData html
densityPlot html
fcsInfoParser html
filterLabels html
findCutoff html
flowHC html
flowSOM.MC html
glmAnalysis html
labelCluster html
labelSummary html
markerFinder html
metaAnalysis html
nameUpdator html
panelSummary html
plotGA html
preprocessing html
preprocessing.batch html
sampleInfoParser html
searchCluster html
searchCluster.batch html
set2Frame html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MetaCyto' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MetaCyto' as MetaCyto_1.6.0.zip
* DONE (MetaCyto)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'MetaCyto' successfully unpacked and MD5 sums checked
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MetaCyto.Rcheck/examples_i386/MetaCyto-Ex.timings
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MetaCyto.Rcheck/examples_x64/MetaCyto-Ex.timings
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