Sofie Van Gassen
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/FlowSOM |
| Branch: RELEASE_3_9 |
| Last Commit: 4f84c50 |
| Last Changed Date: 2019-05-02 11:53:51 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:32:08 -0400 (Wed, 16 Oct 2019).
| Package 578/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| FlowSOM 1.16.0 Sofie Van Gassen
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: FlowSOM |
| Version: 1.16.0 |
| Command: rm -rf FlowSOM.buildbin-libdir && mkdir FlowSOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FlowSOM.buildbin-libdir FlowSOM_1.16.0.tar.gz |
| StartedAt: 2019-10-16 09:13:45 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 09:14:28 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 42.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: FlowSOM_1.16.0.zip |
| PackageFileSize: 2.697 MiB |
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### Running command:
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### rm -rf FlowSOM.buildbin-libdir && mkdir FlowSOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FlowSOM.buildbin-libdir FlowSOM_1.16.0.tar.gz
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install for i386
* installing *source* package 'FlowSOM' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c som.c -o som.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o FlowSOM.dll tmp.def som.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/FlowSOM.buildbin-libdir/00LOCK-FlowSOM/00new/FlowSOM/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'FlowSOM'
finding HTML links ... done
AddFlowFrame html
AggregateFlowFrames html
BuildMST html
BuildSOM html
CountGroups html
Dist.MST html
FMeasure html
FlowSOM html
FlowSOMSubset html
Initialize html
MapDataToCodes html
MetaClustering html
NewData html
PlotCenters html
PlotClusters2D html
PlotGroups html
PlotMarker html
PlotNode html
PlotNumbers html
PlotPies html
PlotStars html
PlotVariable html
ProcessGatingML html
finding level-2 HTML links ... done
Purity html
QueryStarPlot html
ReadInput html
SOM html
SaveClustersToFCS html
UpdateNodeSize html
computeBackgroundColor html
metaClustering_consensus html
plotStarLegend html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'FlowSOM' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c som.c -o som.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o FlowSOM.dll tmp.def som.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/FlowSOM.buildbin-libdir/FlowSOM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FlowSOM' as FlowSOM_1.16.0.zip
* DONE (FlowSOM)