ELBOW 1.20.0
Graham Alvare , Xiangli Zhang
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/ELBOW |
| Branch: RELEASE_3_9 |
| Last Commit: f8fff15 |
| Last Changed Date: 2019-05-02 11:53:46 -0400 (Thu, 02 May 2019) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | [ ERROR ] | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ELBOW
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* checking for file ‘ELBOW/DESCRIPTION’ ... OK
* preparing ‘ELBOW’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Elbow_tutorial_vignette.Rnw’ using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
No supplemental files found.
Check URL manually if in doubt
https://ftp.ncbi.nlm.nih.gov/geo/series/GSE20nnn/GSE20986/suppl/
/bin/tar: GSE20986/GSE20986_RAW.tar: Cannot open: No such file or directory
/bin/tar: Error is not recoverable: exiting now
Warning in untar("GSE20986/GSE20986_RAW.tar", exdir = "data") :
‘/bin/tar -xf 'GSE20986/GSE20986_RAW.tar' -C 'data'’ returned error code 2
Error: processing vignette 'Elbow_tutorial_vignette.Rnw' failed with diagnostics:
chunk 2 (label = load_limmma)
Error in FUN(X[[i]], ...) :
Argument 'filename' and 'destname' are identical: data/
--- failed re-building ‘Elbow_tutorial_vignette.Rnw’
SUMMARY: processing the following file failed:
‘Elbow_tutorial_vignette.Rnw’
Error: Vignette re-building failed.
Execution halted