Bioconductor Package Maintainer
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/DynDoc |
| Branch: RELEASE_3_9 |
| Last Commit: 36c9824 |
| Last Changed Date: 2019-05-02 11:53:01 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:18:33 -0400 (Wed, 16 Oct 2019).
| Package 474/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DynDoc 1.62.0 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: DynDoc |
| Version: 1.62.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DynDoc.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings DynDoc_1.62.0.tar.gz |
| StartedAt: 2019-10-16 03:25:18 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 03:25:47 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 28.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DynDoc.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DynDoc.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings DynDoc_1.62.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/DynDoc.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DynDoc/DESCRIPTION' ... OK
* this is package 'DynDoc' version '1.62.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DynDoc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'methods'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'methods' which was already attached by Depends.
Please remove these calls from your code.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'DynDoc/R/zzz.R':
.onLoad has wrong argument list 'pkgname, libname'
.onLoad calls:
require("methods")
Package startup functions should have two arguments with names starting
with 'lib' and 'pkg', respectively.
Package startup functions should not change the search path.
See section 'Good practice' in '?.onAttach'.
getVignette: no visible global function definition for 'Stangle'
getVignette: no visible global function definition for
'buildVersionNumber'
getVignette: no visible global function definition for
'installed.packages'
getVignette: no visible global function definition for
'package.description'
getVignetteCode: no visible global function definition for 'Stangle'
tangleToR: no visible binding for global variable 'RtangleWritedoc'
tangleToR: no visible binding for global variable 'RweaveLatexOptions'
Undefined global functions or variables:
RtangleWritedoc RweaveLatexOptions Stangle buildVersionNumber
installed.packages package.description
Consider adding
importFrom("utils", "RtangleWritedoc", "RweaveLatexOptions", "Stangle",
"installed.packages")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/DynDoc.Rcheck/00check.log'
for details.
DynDoc.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DynDoc_1.62.0.tar.gz && rm -rf DynDoc.buildbin-libdir && mkdir DynDoc.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DynDoc.buildbin-libdir DynDoc_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DynDoc_1.62.0.zip && rm DynDoc_1.62.0.tar.gz DynDoc_1.62.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 11197 100 11197 0 0 75772 0 --:--:-- --:--:-- --:--:-- 79411
install for i386
* installing *source* package 'DynDoc' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DynDoc'
finding HTML links ... done
DynDoc-class html
SweaveOptions-class html
Vignette-class html
chunkList-class html
codeChunk-class html
getPkgVigList html
getVignette html
getVignetteCode html
getVignetteHeader html
tangleToR html
vignetteCode-class html
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DynDoc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DynDoc' as DynDoc_1.62.0.zip
* DONE (DynDoc)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'DynDoc' successfully unpacked and MD5 sums checked
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DynDoc.Rcheck/examples_i386/DynDoc-Ex.timings
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DynDoc.Rcheck/examples_x64/DynDoc-Ex.timings
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