Yuanyuan Xiao
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/DEDS |
| Branch: RELEASE_3_9 |
| Last Commit: 9f919d0 |
| Last Changed Date: 2019-05-02 11:53:03 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:19:39 -0400 (Wed, 16 Oct 2019).
| Package 403/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DEDS 1.58.0 Yuanyuan Xiao
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: DEDS |
| Version: 1.58.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DEDS_1.58.0.tar.gz && rm -rf DEDS.buildbin-libdir && mkdir DEDS.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEDS.buildbin-libdir DEDS_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DEDS_1.58.0.zip && rm DEDS_1.58.0.tar.gz DEDS_1.58.0.zip |
| StartedAt: 2019-10-15 18:39:06 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 18:40:11 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 64.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DEDS_1.58.0.tar.gz && rm -rf DEDS.buildbin-libdir && mkdir DEDS.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEDS.buildbin-libdir DEDS_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DEDS_1.58.0.zip && rm DEDS_1.58.0.tar.gz DEDS_1.58.0.zip
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0 0 0 0 0 0 0 0 --:--:-- 0:00:01 --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- 0:00:02 --:--:-- 0
3 3077k 3 112k 0 0 39479 0 0:01:19 0:00:02 0:01:17 39602
46 3077k 46 1424k 0 0 357k 0 0:00:08 0:00:03 0:00:05 358k
100 3077k 100 3077k 0 0 669k 0 0:00:04 0:00:04 --:--:-- 671k
install for i386
* installing *source* package 'DEDS' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c deds.c -o deds.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c distance.c -o distance.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c input.c -o input.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c manip.c -o manip.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c random.c -o random.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sampling.c -o sampling.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c stat_fun.c -o stat_fun.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DEDS.dll tmp.def deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DEDS.buildbin-libdir/00LOCK-DEDS/00new/DEDS/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DEDS'
finding HTML links ... done
ApoA1 html
DEDS-internal html
affySpikeIn html
aggregateFun html
comp.B html
comp.F html
comp.FC html
comp.SAM html
comp.adjp html
comp.ebayes html
comp.fdr html
comp.modF html
comp.modt html
comp.stat html
comp.t html
comp.unadjp html
deds.chooseTest html
deds.class html
deds.genExtra html
deds.pval html
deds.stat html
deds.stat.linkC html
hist.DEDS html
pairs.DEDS html
qqnorm.DEDS html
topgenes html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DEDS' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c deds.c -o deds.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c distance.c -o distance.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c input.c -o input.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c manip.c -o manip.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c random.c -o random.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sampling.c -o sampling.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c stat_fun.c -o stat_fun.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DEDS.dll tmp.def deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DEDS.buildbin-libdir/DEDS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEDS' as DEDS_1.58.0.zip
* DONE (DEDS)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'DEDS' successfully unpacked and MD5 sums checked