Zuguang Gu
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/ComplexHeatmap |
| Branch: RELEASE_3_9 |
| Last Commit: 97863d8 |
| Last Changed Date: 2019-05-02 11:53:53 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:32:52 -0400 (Wed, 16 Oct 2019).
| Package 331/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ComplexHeatmap 2.0.0 Zuguang Gu
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ComplexHeatmap |
| Version: 2.0.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ComplexHeatmap.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings ComplexHeatmap_2.0.0.tar.gz |
| StartedAt: 2019-10-16 02:52:12 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 02:55:13 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 180.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ComplexHeatmap.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ComplexHeatmap.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings ComplexHeatmap_2.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/ComplexHeatmap.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ComplexHeatmap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ComplexHeatmap' version '2.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ComplexHeatmap' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
anno_horizon 7.03 0.03 7.07
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
anno_horizon 5.8 0.06 5.86
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'test-all.R'
OK
** running tests for arch 'x64' ...
Running 'test-all.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ComplexHeatmap.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ComplexHeatmap_2.0.0.tar.gz && rm -rf ComplexHeatmap.buildbin-libdir && mkdir ComplexHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ComplexHeatmap_2.0.0.zip && rm ComplexHeatmap_2.0.0.tar.gz ComplexHeatmap_2.0.0.zip
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install for i386
* installing *source* package 'ComplexHeatmap' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ComplexHeatmap'
finding HTML links ... done
AdditiveUnit-class html
AdditiveUnit html
AnnotationFunction-class html
AnnotationFunction html
ColorMapping-class html
ColorMapping html
ComplexHeatmap-package html
Extract.AnnotationFunction html
Extract.Heatmap html
Extract.HeatmapAnnotation html
Extract.HeatmapList html
Extract.SingleAnnotation html
Extract.comb_mat html
Heatmap-class html
Heatmap html
HeatmapAnnotation-class html
HeatmapAnnotation html
HeatmapList-class html
HeatmapList html
Legend html
Legends-class html
Legends html
SingleAnnotation-class html
SingleAnnotation html
UpSet html
add.AdditiveUnit html
add_heatmap-Heatmap-method html
add_heatmap-HeatmapAnnotation-method html
add_heatmap-HeatmapList-method html
add_heatmap-dispatch html
adjust_dend_by_x html
adjust_heatmap_list-HeatmapList-method
html
anno_barplot html
anno_block html
anno_boxplot html
anno_density html
anno_empty html
anno_histogram html
anno_horizon html
anno_image html
anno_joyplot html
anno_lines html
anno_link html
anno_mark html
anno_oncoprint_barplot html
anno_points html
anno_simple html
anno_summary html
anno_text html
anno_zoom html
annotation_axis_grob html
annotation_legend_size-HeatmapList-method
html
c.HeatmapAnnotation html
cluster_within_group html
color_mapping_legend-ColorMapping-method
html
columnAnnotation html
column_dend-Heatmap-method html
column_dend-HeatmapList-method html
column_dend-dispatch html
column_order-Heatmap-method html
column_order-HeatmapList-method html
column_order-dispatch html
comb_degree html
comb_name html
comb_size html
component_height-Heatmap-method html
component_height-HeatmapList-method html
component_height-dispatch html
component_width-Heatmap-method html
component_width-HeatmapList-method html
component_width-dispatch html
copy_all-AnnotationFunction-method html
copy_all-SingleAnnotation-method html
copy_all-dispatch html
decorate_annotation html
decorate_column_dend html
decorate_column_names html
decorate_column_title html
decorate_dend html
decorate_dimnames html
decorate_heatmap_body html
decorate_row_dend html
decorate_row_names html
decorate_row_title html
decorate_title html
default_axis_param html
default_get_type html
dend_heights html
dend_xy html
dendrogramGrob html
densityHeatmap html
dim.Heatmap html
dist2 html
draw-AnnotationFunction-method html
draw-Heatmap-method html
draw-HeatmapAnnotation-method html
draw-HeatmapList-method html
draw-Legends-method html
draw-SingleAnnotation-method html
draw-dispatch html
draw_annotation-Heatmap-method html
draw_annotation_legend-HeatmapList-method
html
draw_dend-Heatmap-method html
draw_dimnames-Heatmap-method html
draw_heatmap_body-Heatmap-method html
draw_heatmap_legend-HeatmapList-method
html
draw_heatmap_list-HeatmapList-method html
draw_title-Heatmap-method html
draw_title-HeatmapList-method html
draw_title-dispatch html
extract_comb html
getXY_in_parent_vp html
get_color_mapping_list-HeatmapAnnotation-method
html
get_legend_param_list-HeatmapAnnotation-method
html
grid.annotation_axis html
grid.boxplot html
grid.dendrogram html
grid.draw.Legends html
heatmap_legend_size-HeatmapList-method
html
height.AnnotationFunction html
height.Heatmap html
height.HeatmapAnnotation html
height.HeatmapList html
height.Legends html
height.SingleAnnotation html
heightAssign.AnnotationFunction html
heightAssign.HeatmapAnnotation html
heightAssign.SingleAnnotation html
heightDetails.annotation_axis html
heightDetails.legend html
heightDetails.legend_body html
heightDetails.packed_legends html
ht_global_opt html
ht_opt html
is_abs_unit html
length.HeatmapAnnotation html
length.HeatmapList html
list_components html
list_to_matrix html
make_column_cluster-Heatmap-method html
make_comb_mat html
make_layout-Heatmap-method html
make_layout-HeatmapList-method html
make_layout-dispatch html
make_row_cluster-Heatmap-method html
map_to_colors-ColorMapping-method html
max_text_height html
max_text_width html
merge_dendrogram html
names.HeatmapAnnotation html
names.HeatmapList html
namesAssign.HeatmapAnnotation html
ncol.Heatmap html
nobs.AnnotationFunction html
nobs.HeatmapAnnotation html
nobs.SingleAnnotation html
normalize_comb_mat html
nrow.Heatmap html
oncoPrint html
order.comb_mat html
packLegend html
pct_v_pct html
pindex html
prepare-Heatmap-method html
print.comb_mat html
re_size-HeatmapAnnotation-method html
restore_matrix html
rowAnnotation html
row_anno_barplot html
row_anno_boxplot html
row_anno_density html
row_anno_histogram html
row_anno_link html
row_anno_points html
row_anno_text html
row_dend-Heatmap-method html
row_dend-HeatmapList-method html
row_dend-dispatch html
row_order-Heatmap-method html
row_order-HeatmapList-method html
row_order-dispatch html
set_component_height-Heatmap-method html
set_component_width-Heatmap-method html
set_name html
set_size html
show-AnnotationFunction-method html
show-ColorMapping-method html
show-Heatmap-method html
show-HeatmapAnnotation-method html
show-HeatmapList-method html
show-SingleAnnotation-method html
show-dispatch html
size.AnnotationFunction html
size.HeatmapAnnotation html
size.SingleAnnotation html
sizeAssign.AnnotationFunction html
sizeAssign.HeatmapAnnotation html
sizeAssign.SingleAnnotation html
smartAlign2 html
str.comb_mat html
subset_gp html
subset_matrix_by_row html
subset_vector html
summary.Heatmap html
summary.HeatmapList html
t.comb_mat html
test_alter_fun html
unify_mat_list html
upset_right_annotation html
upset_top_annotation html
width.AnnotationFunction html
width.Heatmap html
width.HeatmapAnnotation html
width.HeatmapList html
width.Legends html
width.SingleAnnotation html
widthAssign.AnnotationFunction html
widthAssign.HeatmapAnnotation html
widthAssign.SingleAnnotation html
widthDetails.annotation_axis html
widthDetails.legend html
widthDetails.legend_body html
widthDetails.packed_legends html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ComplexHeatmap' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ComplexHeatmap' as ComplexHeatmap_2.0.0.zip
* DONE (ComplexHeatmap)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ComplexHeatmap' successfully unpacked and MD5 sums checked
|
ComplexHeatmap.Rcheck/tests_i386/test-all.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(ComplexHeatmap)))
>
> test_check("ComplexHeatmap")
== testthat results ===========================================================
[ OK: 96 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
21.53 0.37 21.89
|
ComplexHeatmap.Rcheck/tests_x64/test-all.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(ComplexHeatmap)))
>
> test_check("ComplexHeatmap")
== testthat results ===========================================================
[ OK: 96 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
23.18 0.21 23.39
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ComplexHeatmap.Rcheck/examples_i386/ComplexHeatmap-Ex.timings
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ComplexHeatmap.Rcheck/examples_x64/ComplexHeatmap-Ex.timings
|