Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:20:48 -0400 (Wed, 16 Oct 2019).
Package 162/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
BioMVCClass 1.52.0 Elizabeth Whalen
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: BioMVCClass |
Version: 1.52.0 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BioMVCClass.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings BioMVCClass_1.52.0.tar.gz |
StartedAt: 2019-10-16 02:15:31 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 02:16:22 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 50.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: BioMVCClass.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BioMVCClass.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings BioMVCClass_1.52.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/BioMVCClass.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'BioMVCClass/DESCRIPTION' ... OK * this is package 'BioMVCClass' version '1.52.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'BioMVCClass' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'methods' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: GSE-class.Rd:63-64: Dropping empty section \examples prepare_Rd: exprModel-class.Rd:42-43: Dropping empty section \examples prepare_Rd: graphModel-class.Rd:41-42: Dropping empty section \examples prepare_Rd: graphView-class.Rd:44-45: Dropping empty section \examples prepare_Rd: gseModel-class.Rd:43-44: Dropping empty section \examples prepare_Rd: heatmapView-class.Rd:56-57: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/BioMVCClass.Rcheck/00check.log' for details.
BioMVCClass.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BioMVCClass_1.52.0.tar.gz && rm -rf BioMVCClass.buildbin-libdir && mkdir BioMVCClass.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioMVCClass.buildbin-libdir BioMVCClass_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BioMVCClass_1.52.0.zip && rm BioMVCClass_1.52.0.tar.gz BioMVCClass_1.52.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 39451 100 39451 0 0 694k 0 --:--:-- --:--:-- --:--:-- 802k install for i386 * installing *source* package 'BioMVCClass' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BioMVCClass' finding HTML links ... done GSE-class html exprModel-class html graphModel-class html graphView-class html gseModel-class html heatmapView-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BioMVCClass' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'BioMVCClass' as BioMVCClass_1.52.0.zip * DONE (BioMVCClass) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'BioMVCClass' successfully unpacked and MD5 sums checked