Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:59:21 -0400 (Tue, 09 Apr 2019).
Package 1703/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
zlibbioc 1.29.0 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: zlibbioc |
Version: 1.29.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/zlibbioc_1.29.0.tar.gz && rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zlibbioc.buildbin-libdir zlibbioc_1.29.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL zlibbioc_1.29.0.zip && rm zlibbioc_1.29.0.tar.gz zlibbioc_1.29.0.zip |
StartedAt: 2019-04-08 19:04:31 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 19:06:52 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 141.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/zlibbioc_1.29.0.tar.gz && rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zlibbioc.buildbin-libdir zlibbioc_1.29.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL zlibbioc_1.29.0.zip && rm zlibbioc_1.29.0.tar.gz zlibbioc_1.29.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 160k 100 160k 0 0 2141k 0 --:--:-- --:--:-- --:--:-- 2359k install for i386 * installing *source* package 'zlibbioc' ... ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs mkdir -p "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include" "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386" make -C zlib-1.2.5 -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll make[1]: Entering directory `/cygdrive/c/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ3If9e/R.INSTALL1aec5f453243/zlibbioc/src/zlib-1.2.5' C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c C:/Rtools/mingw_32/bin/gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c C:/Rtools/mingw_32/bin/ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o C:/Rtools/mingw_32/bin/windres --define GCC_WINDRES --target=pe-i386 -o zlibrc.o win32/zlib1.rc C:/Rtools/mingw_32/bin/gcc -m32 -shared -Wl,--out-implib,libzbiocdll.a \ -o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o zlibrc.o C:/Rtools/mingw_32/bin/strip zlib1bioc.dll make[1]: Leaving directory `/cygdrive/c/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ3If9e/R.INSTALL1aec5f453243/zlibbioc/src/zlib-1.2.5' cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \ "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386" cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include" C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_init_zlibbioc.c -o R_init_zlibbioc.o C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386 ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'zlibbioc' finding HTML links ... done pkgconfig html zlibbioc-package html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'zlibbioc' ... ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs mkdir -p "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include" "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64" make -C zlib-1.2.5 -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll make[1]: Entering directory `/cygdrive/c/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOm5mYx/R.INSTALL18945afd61da/zlibbioc/src/zlib-1.2.5' C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c C:/Rtools/mingw_64/bin/gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c C:/Rtools/mingw_64/bin/ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o C:/Rtools/mingw_64/bin/windres --define GCC_WINDRES --target=pe-x86-64 -o zlibrc.o win32/zlib1.rc C:/Rtools/mingw_64/bin/gcc -m64 -shared -Wl,--out-implib,libzbiocdll.a \ -o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o zlibrc.o C:/Rtools/mingw_64/bin/strip zlib1bioc.dll make[1]: Leaving directory `/cygdrive/c/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOm5mYx/R.INSTALL18945afd61da/zlibbioc/src/zlib-1.2.5' cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \ "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64" cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include" C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_init_zlibbioc.c -o R_init_zlibbioc.o C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'zlibbioc' as zlibbioc_1.29.0.zip * DONE (zlibbioc) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'zlibbioc' successfully unpacked and MD5 sums checked