Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:47:47 -0400 (Tue, 09 Apr 2019).
Package 1687/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
wiggleplotr 1.7.1 Kaur Alasoo
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ WARNINGS ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: wiggleplotr |
Version: 1.7.1 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:wiggleplotr.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings wiggleplotr_1.7.1.tar.gz |
StartedAt: 2019-04-09 04:19:48 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 04:21:06 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 77.9 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: wiggleplotr.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:wiggleplotr.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings wiggleplotr_1.7.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/wiggleplotr.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘wiggleplotr/DESCRIPTION’ ... OK * this is package ‘wiggleplotr’ version ‘1.7.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘wiggleplotr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plotCoverage: no visible global function definition for ‘is’ plotTranscripts: no visible global function definition for ‘is’ Undefined global functions or variables: is Consider adding importFrom("methods", "is") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Codoc mismatches from documentation object 'getGenotypePalette': getGenotypePalette Code: function(old = FALSE) Docs: function() Argument names in code not in docs: old * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... WARNING Found the following significant warnings: Warning: 'AnnotationFilter::GenenameFilter' is deprecated. Deprecated functions may be defunct as soon as of the next release of R. See ?Deprecated. Examples with CPU or elapsed time > 5s user system elapsed plotCoverageFromEnsembldb 9.676 0.436 10.355 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 1 NOTE See ‘/home/biocbuild/bbs-3.9-bioc/meat/wiggleplotr.Rcheck/00check.log’ for details.
wiggleplotr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL wiggleplotr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘wiggleplotr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wiggleplotr)
wiggleplotr.Rcheck/tests/testthat.Rout
R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(wiggleplotr) > > test_check("wiggleplotr") ══ testthat results ═══════════════════════════════════════════════════════════ OK: 6 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 6.391 0.170 6.550
wiggleplotr.Rcheck/wiggleplotr-Ex.timings
name | user | system | elapsed | |
getGenotypePalette | 0 | 0 | 0 | |
makeManhattanPlot | 0.387 | 0.020 | 0.406 | |
plotCoverage | 3.541 | 0.088 | 3.629 | |
plotCoverageFromEnsembldb | 9.676 | 0.436 | 10.355 | |
plotCoverageFromUCSC | 0.375 | 0.000 | 0.375 | |
plotTranscripts | 0.932 | 0.020 | 0.952 | |
plotTranscriptsFromEnsembldb | 1.075 | 0.092 | 1.551 | |
plotTranscriptsFromUCSC | 4.427 | 0.112 | 4.542 | |