Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:45:36 -0400 (Tue, 09 Apr 2019).
Package 1554/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
sscu 2.13.0 Yu Sun
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ WARNINGS ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: sscu |
Version: 2.13.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:sscu.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings sscu_2.13.0.tar.gz |
StartedAt: 2019-04-09 03:52:11 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 03:53:47 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 96.0 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: sscu.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:sscu.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings sscu_2.13.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/sscu.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘sscu/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘sscu’ version ‘2.13.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘sscu’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': ‘sscu.Rmd’ Files named as vignettes but with no recognized vignette engine: ‘vignettes/sscu.Rmd’ (Is a VignetteBuilder field missing?) * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed op_corre_CodonW 14.241 0.019 14.310 op_corre_NCprime 11.734 0.008 11.799 * checking PDF version of manual ... OK * DONE Status: 1 WARNING See ‘/home/biocbuild/bbs-3.9-bioc/meat/sscu.Rcheck/00check.log’ for details.
sscu.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL sscu ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘sscu’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sscu)
sscu.Rcheck/sscu-Ex.timings
name | user | system | elapsed | |
akashi_test | 0.018 | 0.000 | 0.125 | |
genomic_gc3 | 0.446 | 0.011 | 0.862 | |
low_frequency_op | 0.937 | 0.052 | 1.220 | |
op_corre_CodonW | 14.241 | 0.019 | 14.310 | |
op_corre_NCprime | 11.734 | 0.008 | 11.799 | |
op_highly | 0.849 | 0.004 | 0.853 | |
op_highly_stats | 1.163 | 0.004 | 1.176 | |
s_index | 0.356 | 0.008 | 0.365 | |