Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:47:57 -0400 (Tue, 09 Apr 2019).
Package 1456/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
semisup 1.7.1 Armin Rauschenberger
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: semisup |
Version: 1.7.1 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:semisup.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings semisup_1.7.1.tar.gz |
StartedAt: 2019-04-09 03:33:00 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 03:33:33 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 33.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: semisup.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:semisup.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings semisup_1.7.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/semisup.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘semisup/DESCRIPTION’ ... OK * this is package ‘semisup’ version ‘1.7.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘semisup’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
semisup.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL semisup ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘semisup’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (semisup)
semisup.Rcheck/tests/testthat.Rout
R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(semisup) > > testthat::test_check("semisup") | | | 0% | |========================================| 100% | | | 0% | |========================================| 100% | | | 0% | |========================================| 100% ══ testthat results ═══════════════════════════════════════════════════════════ OK: 20 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 5.888 0.067 5.954
semisup.Rcheck/semisup-Ex.timings
name | user | system | elapsed | |
debug | 0.001 | 0.000 | 0.000 | |
estim.nbinom | 0.423 | 0.000 | 0.423 | |
fit.nbinom | 0.012 | 0.000 | 0.013 | |
fit.norm | 0.007 | 0.004 | 0.011 | |
fit.wrap | 0.006 | 0.004 | 0.010 | |
fit.zinb | 0.005 | 0.000 | 0.005 | |
mixtura | 0.053 | 0.004 | 0.057 | |
resam.lrts | 0.009 | 0.000 | 0.009 | |
scrutor | 0.066 | 0.008 | 0.075 | |