Package: psygenet2r

Version: 1.15.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/psygenet2r_1.15.0.tar.gz && rm -rf psygenet2r.buildbin-libdir && mkdir psygenet2r.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=psygenet2r.buildbin-libdir psygenet2r_1.15.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL psygenet2r_1.15.0.zip && rm psygenet2r_1.15.0.tar.gz psygenet2r_1.15.0.zip

StartedAt: 2019-04-08 19:29:36 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 19:31:10 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 94.6 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/psygenet2r_1.15.0.tar.gz && rm -rf psygenet2r.buildbin-libdir && mkdir psygenet2r.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=psygenet2r.buildbin-libdir psygenet2r_1.15.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL psygenet2r_1.15.0.zip && rm psygenet2r_1.15.0.tar.gz psygenet2r_1.15.0.zip
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install for i386

* installing *source* package 'psygenet2r' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: possible error in 'psygenetGene(x, databse = "ALL")': unused argument (databse = "ALL") 
Note: possible error in 'psygenetGene(x, databse = "ALL")': unused argument (databse = "ALL") 
Note: possible error in 'psygenetGene(x, databse = "ALL")': unused argument (databse = "ALL") 
Note: possible error in 'psygenetGene(x, databse = "ALL", ': unused argument (databse = "ALL") 
** help
*** installing help indices
  converting help for package 'psygenet2r'
    finding HTML links ... done
    DataGeNET.Psy-class                     html  
    JaccardIndexPsy-class                   html  
    enrichedPD-methods                      html  
    extract                                 html  
    extractSentences                        html  
    geneAttrPlot-methods                    html  
    getUMLs-methods                         html  
    jaccardEstimation-methods               html  
    ndisease                                html  
    ngene                                   html  
    pantherGraphic-methods                  html  
    plot-DataGeNET.Psy-ANY-method           html  
    plot-JaccardIndexPsy-ANY-method         html  
    psygenet2r                              html  
    psygenetDisease-methods                 html  
    psygenetDiseaseSentences                html  
    psygenetGene-methods                    html  
    psygenetGeneSentences                   html  
    qr                                      html  
    topAnatEnrichment-methods               html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpkRxoQy/R.INSTALL1d801ced1b09/psygenet2r/man/topAnatEnrichment-methods.Rd:21: file link 'runTest' in package 'topGO' does not exist and so has been treated as a topic
    universe                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'psygenet2r' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'psygenet2r' as psygenet2r_1.15.0.zip
* DONE (psygenet2r)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'psygenet2r' successfully unpacked and MD5 sums checked