Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:17:58 -0400 (Tue, 09 Apr 2019).
Package 1152/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
pathprint 1.13.0 Sokratis Kariotis
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: pathprint |
Version: 1.13.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:pathprint.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings pathprint_1.13.0.tar.gz |
StartedAt: 2019-04-09 04:13:54 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 04:21:59 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 484.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: pathprint.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:pathprint.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings pathprint_1.13.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/pathprint.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘pathprint/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘pathprint’ version ‘1.13.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘pathprint’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE exprs2fingerprint: no visible binding for global variable ‘chipframe’ exprs2fingerprint: no visible binding for global variable ‘genesets’ thresholdFingerprint: no visible binding for global variable ‘platform.thresholds’ Undefined global functions or variables: chipframe genesets platform.thresholds * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed single.chip.enrichment 99.701 27.417 127.281 diffPathways 64.563 16.140 80.915 consensusDistance 31.921 4.423 42.250 pathprint-package 30.120 5.236 35.576 thresholdFingerprint 29.544 5.586 35.132 consensusFingerprint 22.219 3.999 26.221 pluripotents.frame 21.908 3.193 26.017 customCDFAnn 19.697 2.996 22.696 exprs2fingerprint 19.884 2.556 22.498 platform.thresholds 15.902 2.916 19.116 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.9-bioc/meat/pathprint.Rcheck/00check.log’ for details.
pathprint.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL pathprint ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘pathprint’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pathprint)
pathprint.Rcheck/pathprint-Ex.timings
name | user | system | elapsed | |
consensusDistance | 31.921 | 4.423 | 42.250 | |
consensusFingerprint | 22.219 | 3.999 | 26.221 | |
customCDFAnn | 19.697 | 2.996 | 22.696 | |
diffPathways | 64.563 | 16.140 | 80.915 | |
exprs2fingerprint | 19.884 | 2.556 | 22.498 | |
genesets | 0.002 | 0.001 | 0.003 | |
pathprint-package | 30.120 | 5.236 | 35.576 | |
pathprint.Ce.gs | 0.020 | 0.002 | 0.022 | |
pathprint.Dm.gs | 0.026 | 0.002 | 0.029 | |
pathprint.Dr.gs | 0.079 | 0.002 | 0.081 | |
pathprint.Hs.gs | 0.041 | 0.004 | 0.044 | |
pathprint.Mm.gs | 0.125 | 0.003 | 0.129 | |
pathprint.Rn.gs | 0.128 | 0.002 | 0.130 | |
platform.thresholds | 15.902 | 2.916 | 19.116 | |
pluripotents.frame | 21.908 | 3.193 | 26.017 | |
single.chip.enrichment | 99.701 | 27.417 | 127.281 | |
thresholdFingerprint | 29.544 | 5.586 | 35.132 | |