Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:35:53 -0400 (Tue, 09 Apr 2019).
Package 1109/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
omicRexposome 1.5.1 Carles Hernandez-Ferrer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: omicRexposome |
Version: 1.5.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:omicRexposome.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings omicRexposome_1.5.1.tar.gz |
StartedAt: 2019-04-09 02:36:28 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 02:40:45 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 257.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: omicRexposome.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:omicRexposome.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings omicRexposome_1.5.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/omicRexposome.Rcheck’ * using R Under development (unstable) (2018-11-27 r75683) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘omicRexposome/DESCRIPTION’ ... OK * this is package ‘omicRexposome’ version ‘1.5.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘omicRexposome’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed association-methods 8.056 0.017 8.135 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
omicRexposome.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL omicRexposome ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘omicRexposome’ ... ** R ** data *** moving datasets to lazyload DB Registered S3 methods overwritten by 'ggplot2': method from [.quosures rlang c.quosures rlang print.quosures rlang Registered S3 method overwritten by 'pryr': method from print.bytes Rcpp ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (omicRexposome)
omicRexposome.Rcheck/omicRexposome-Ex.timings
name | user | system | elapsed | |
add_cls-methods | 0.240 | 0.007 | 0.255 | |
add_exp-methods | 0.047 | 0.005 | 0.053 | |
asr | 0.023 | 0.002 | 0.025 | |
association-methods | 8.056 | 0.017 | 8.135 | |
crossomics-methods | 0.608 | 0.012 | 0.627 | |
crs | 0.002 | 0.001 | 0.003 | |
getIntegration-methods | 0.002 | 0.000 | 0.002 | |
mds | 0.007 | 0.001 | 0.007 | |
plotAssociation-methods | 0.424 | 0.025 | 0.455 | |
plotHits-methods | 0.244 | 0.002 | 0.250 | |
plotIntegration-methods | 0.891 | 0.006 | 0.910 | |
plotLambda-methods | 0.238 | 0.003 | 0.247 | |
tableHits-methods | 0.075 | 0.003 | 0.078 | |
tableLambda-methods | 0.088 | 0.002 | 0.090 | |