Package: manta

Version: 1.29.1

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/manta_1.29.1.tar.gz && rm -rf manta.buildbin-libdir && mkdir manta.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=manta.buildbin-libdir manta_1.29.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL manta_1.29.1.zip && rm manta_1.29.1.tar.gz manta_1.29.1.zip

StartedAt: 2019-04-08 18:58:44 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 18:59:46 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 62.1 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/manta_1.29.1.tar.gz && rm -rf manta.buildbin-libdir && mkdir manta.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=manta.buildbin-libdir manta_1.29.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL manta_1.29.1.zip && rm manta_1.29.1.tar.gz manta_1.29.1.zip
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install for i386

* installing *source* package 'manta' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'manta'
    finding HTML links ... done
    cmdArgsToVariables                      html  
    collapseRepliCounts                     html  
    compbiasPlot                            html  
    compbiasTest                            html  
    generateWeights                         html  
    in2manta                                html  
    makeSampleDF                            html  
    manta-class                             html  
    manta                                   html  
    meta2counts                             html  
    metataxa2subcounts                      html  
    nf2nr                                   html  
    normfact2absTMM                         html  
    nr                                      html  
    outliers                                html  
    plot.manta                              html  
    pplacer2manta                           html  
    readSeastar                             html  
    seastar2counts                          html  
    summary.manta                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'manta' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'manta' as manta_1.29.1.zip
* DONE (manta)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'manta' successfully unpacked and MD5 sums checked