Multiple platform build/check report for BioC 3.9 - CHECK report for maSigPro on celaya2

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings maSigPro_1.55.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/maSigPro.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.55.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
tableDS       22.610  0.891  23.590
seeDS         21.552  0.904  22.546
getDSPatterns 21.088  0.918  22.093
getDS         20.654  0.871  21.609
ISOdata       19.610  1.071  20.682
IsoModel      19.684  0.916  20.760
PodiumChange  19.531  0.701  20.234
ISOdesign     18.366  0.792  19.160
IsoPlot       18.306  0.730  19.081
T.fit          9.620  0.082   9.703
maSigPro       6.641  0.083   6.726
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL maSigPro
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘maSigPro’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘maSigPro.Rnw’ 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output

Example timings

name	user	system	elapsed
ISOdata	19.610	1.071	20.682
ISOdesign	18.366	0.792	19.160
IsoModel	19.684	0.916	20.760
IsoPlot	18.306	0.730	19.081
NBdata	0.002	0.002	0.004
NBdesign	0.002	0.002	0.004
PlotGroups	0.040	0.005	0.055
PlotProfiles	0.010	0.005	0.022
PodiumChange	19.531	0.701	20.234
T.fit	9.620	0.082	9.703
average.rows	0.003	0.001	0.003
data.abiotic	0.003	0.001	0.006
edesign.abiotic	0.004	0.002	0.005
edesignCT	0.001	0.001	0.003
edesignDR	0.001	0.002	0.003
get.siggenes	4.477	0.044	4.521
getDS	20.654	0.871	21.609
getDSPatterns	21.088	0.918	22.093
i.rank	0.000	0.000	0.001
maSigPro	6.641	0.083	6.726
maSigProUsersGuide	0.007	0.007	0.013
make.design.matrix	0.015	0.013	0.028
p.vector	3.417	0.052	3.469
position	0.001	0.000	0.001
reg.coeffs	0.001	0.001	0.001
see.genes	1.344	0.292	1.932
seeDS	21.552	0.904	22.546
stepback	0.049	0.002	0.051
stepfor	0.162	0.004	0.166
suma2Venn	0.104	0.007	0.128
tableDS	22.610	0.891	23.590
two.ways.stepback	0.171	0.002	0.172
two.ways.stepfor	0.204	0.005	0.210

CHECK report for maSigPro on celaya2

Summary

Command output

Installation output

Tests output

Example timings