Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:25:26 -0400 (Tue, 09 Apr 2019).
Package 845/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
kimod 1.11.0 M L Zingaretti
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: kimod |
Version: 1.11.0 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:kimod.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings kimod_1.11.0.tar.gz |
StartedAt: 2019-04-09 03:48:42 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 03:50:29 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 106.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: kimod.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:kimod.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings kimod_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/kimod.Rcheck' * using R Under development (unstable) (2019-03-09 r76216) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'kimod/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'kimod' version '1.11.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'kimod' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Continous: no visible global function definition for 'lm' Continous: no visible global function definition for 'pf' Continous: no visible global function definition for 'AIC' Continous: no visible global function definition for 'BIC' DiStatis: no visible global function definition for 'as.dist' compbin: no visible global function definition for 'na.omit' confelli: no visible global function definition for 'qf' confelli: no visible global function definition for 'runif' dist.binary: no visible global function definition for 'as.dist' distan: no visible global function definition for 'dist' distan: no visible global function definition for 'cor' maha: no visible global function definition for 'cov' Biplot,SelectVar: no visible global function definition for 'cutree' BootPlot,Bootstrap: no visible global function definition for 'cov' BootPlot,Bootstrap: no visible global function definition for 'rgb' Bootstrap,DiStatis: no visible binding for global variable 'sd' Bootstrap,DiStatis: no visible global function definition for 'qt' GroupProj,SelectVar: no visible global function definition for 'cutree' SelectVar,DiStatis: no visible global function definition for 'p.adjust' TrajPlot,DiStatis: no visible global function definition for 'rgb' print,Bootstrap: no visible global function definition for 'head' print,DiStatis: no visible global function definition for 'head' print,GroupProj: no visible global function definition for 'head' print,SelectVar: no visible global function definition for 'head' Undefined global functions or variables: AIC BIC as.dist cor cov cutree dist head lm na.omit p.adjust pf qf qt rgb runif sd Consider adding importFrom("grDevices", "rgb") importFrom("stats", "AIC", "BIC", "as.dist", "cor", "cov", "cutree", "dist", "lm", "na.omit", "p.adjust", "pf", "qf", "qt", "runif", "sd") importFrom("utils", "head") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed DiStatis-Bootstrap 6.11 0.02 6.13 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed DiStatis-Bootstrap 7.61 0.03 7.64 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/kimod.Rcheck/00check.log' for details.
kimod.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/kimod_1.11.0.tar.gz && rm -rf kimod.buildbin-libdir && mkdir kimod.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=kimod.buildbin-libdir kimod_1.11.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL kimod_1.11.0.zip && rm kimod_1.11.0.tar.gz kimod_1.11.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 380k 100 380k 0 0 5663k 0 --:--:-- --:--:-- --:--:-- 6233k install for i386 * installing *source* package 'kimod' ... ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'kimod' finding HTML links ... done BootPlot html Bootstrap-Class html Bootstrap-print.Boot html Bootstrap-summary html DiStatis-Bootstrap html DiStatis-Class html DiStatis-CompPlot html DiStatis-DiStatis html DiStatis-PanelPlot html DiStatis-RVPlot html DiStatis-SelectVar html DiStatis-TrajPlot html DiStatis-print html DiStatis-summary html GroupProj-Class html GroupProj-print html GroupProj-summary html GroupProj html NCI60Selec html NCI60Selec_ESet html SelectVar-Biplot html SelectVar-Class html SelectVar-print html SelectVar-summary html winesassesors html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'kimod' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'kimod' as kimod_1.11.0.zip * DONE (kimod) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'kimod' successfully unpacked and MD5 sums checked
kimod.Rcheck/examples_i386/kimod-Ex.timings
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kimod.Rcheck/examples_x64/kimod-Ex.timings
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