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BUILD report for gwasurvivr on tokay2

This page was generated on 2019-04-09 12:40:16 -0400 (Tue, 09 Apr 2019).

Package 727/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gwasurvivr 1.1.0
Abbas Rizvi
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/gwasurvivr
Branch: master
Last Commit: b9ac9a9
Last Changed Date: 2018-10-30 11:54:39 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: gwasurvivr
Version: 1.1.0
Command: chmod a+r gwasurvivr -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gwasurvivr
StartedAt: 2019-04-09 00:27:03 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 00:28:20 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 76.4 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r gwasurvivr -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gwasurvivr
###
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* checking for file 'gwasurvivr/DESCRIPTION' ... OK
* preparing 'gwasurvivr':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'gwasurvivr_Introduction.Rmd' using rmarkdown
Quitting from lines 298-313 (gwasurvivr_Introduction.Rmd) 
Error: processing vignette 'gwasurvivr_Introduction.Rmd' failed with diagnostics:
invalid class "VCFHeader" object: 1: 'info(VCFHeader)' must be a 3 column DataFrame with names Number, Type, Description
invalid class "VCFHeader" object: 2: 'geno(VCFHeader)' must be a 3 column DataFrame with names Number, Type, Description
--- failed re-building 'gwasurvivr_Introduction.Rmd'

SUMMARY: processing the following file failed:
  'gwasurvivr_Introduction.Rmd'

Error: Vignette re-building failed.
Execution halted