Package: gwascat

Version: 2.15.1

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/gwascat_2.15.1.tar.gz && rm -rf gwascat.buildbin-libdir && mkdir gwascat.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gwascat.buildbin-libdir gwascat_2.15.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL gwascat_2.15.1.zip && rm gwascat_2.15.1.tar.gz gwascat_2.15.1.zip

StartedAt: 2019-04-08 20:26:41 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 20:28:43 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 122.3 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/gwascat_2.15.1.tar.gz && rm -rf gwascat.buildbin-libdir && mkdir gwascat.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gwascat.buildbin-libdir gwascat_2.15.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL gwascat_2.15.1.zip && rm gwascat_2.15.1.tar.gz gwascat_2.15.1.zip
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install for i386

* installing *source* package 'gwascat' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gwascat'
    finding HTML links ... done
    bindcadd_snv                            html  
    gwascat-package                         html  
    gwastagger                              html  
    gwaswloc-class                          html  
    finding level-2 HTML links ... done

    gwcex2gviz                              html  
    gwdf_2012_02_02                         html  
    ldtagr                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpkT3wi9/R.INSTALL277c6f414564/gwascat/man/ldtagr.Rd:19: file link 'genotypeToSnpMatrix' in package 'VariantAnnotation' does not exist and so has been treated as a topic
    locon6                                  html  
    makeCurrentGwascat                      html  
    obo2graphNEL                            html  
    riskyAlleleCount                        html  
    topTraits                               html  
    traitsManh                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'gwascat' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gwascat' as gwascat_2.15.1.zip
* DONE (gwascat)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'gwascat' successfully unpacked and MD5 sums checked