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INSTALL report for genotypeeval on tokay2

This page was generated on 2019-04-09 12:24:35 -0400 (Tue, 09 Apr 2019).

Package 655/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genotypeeval 1.15.0
Jennifer Tom
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/genotypeeval
Branch: master
Last Commit: f12057d
Last Changed Date: 2018-10-30 11:54:34 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: genotypeeval
Version: 1.15.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/genotypeeval_1.15.0.tar.gz && rm -rf genotypeeval.buildbin-libdir && mkdir genotypeeval.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genotypeeval.buildbin-libdir genotypeeval_1.15.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL genotypeeval_1.15.0.zip && rm genotypeeval_1.15.0.tar.gz genotypeeval_1.15.0.zip
StartedAt: 2019-04-08 20:12:28 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:13:49 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 81.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/genotypeeval_1.15.0.tar.gz && rm -rf genotypeeval.buildbin-libdir && mkdir genotypeeval.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genotypeeval.buildbin-libdir genotypeeval_1.15.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL genotypeeval_1.15.0.zip && rm genotypeeval_1.15.0.tar.gz genotypeeval_1.15.0.zip
###
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install for i386

* installing *source* package 'genotypeeval' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'genotypeeval'
    finding HTML links ... done
    GoldData-class                          html  
    GoldDataFromGRanges                     html  
    GoldDataParam-class                     html  
    GoldDataParam                           html  
    ReadGoldData                            html  
    ReadVCFData                             html  
    ReadVCFDataChunk                        html  
    VCFData-class                           html  
    VCFEvaluate                             html  
    VCFQAParam-class                        html  
    VCFQAParam                              html  
    VCFQAReport-class                       html  
    XHeterozygosity                         html  
    admixture                               html  
    callbyChrPlot                           html  
    calltypePlot                            html  
    chunkData                               html  
    computeTiTv                             html  
    didSamplePass                           html  
    didSamplePassOverall                    html  
    genotypeQualityPlot                     html  
    getCoefs                                html  
    getDescriptors                          html  
    getName                                 html  
    getPlots                                html  
    getResults                              html  
    getVR                                   html  
    goldCompare                             html  
    hetGap                                  html  
    hetsMasked                              html  
    homrefPlot                              html  
    meanGQ                                  html  
    myf                                     html  
    numberCalls                             html  
    numberOfHets                            html  
    numberOfHomRefs                         html  
    numberOfHomVars                         html  
    percentHets                             html  
    percentInTarget                         html  
    rareCompare                             html  
    readDepth                               html  
    readVcfGold                             html  
    readdepthPlot                           html  
    reformatData                            html  
    titv                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'genotypeeval' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genotypeeval' as genotypeeval_1.15.0.zip
* DONE (genotypeeval)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'genotypeeval' successfully unpacked and MD5 sums checked