Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:24:35 -0400 (Tue, 09 Apr 2019).
Package 655/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
genotypeeval 1.15.0 Jennifer Tom
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | ERROR | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: genotypeeval |
Version: 1.15.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/genotypeeval_1.15.0.tar.gz && rm -rf genotypeeval.buildbin-libdir && mkdir genotypeeval.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genotypeeval.buildbin-libdir genotypeeval_1.15.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL genotypeeval_1.15.0.zip && rm genotypeeval_1.15.0.tar.gz genotypeeval_1.15.0.zip |
StartedAt: 2019-04-08 20:12:28 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 20:13:49 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 81.3 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/genotypeeval_1.15.0.tar.gz && rm -rf genotypeeval.buildbin-libdir && mkdir genotypeeval.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genotypeeval.buildbin-libdir genotypeeval_1.15.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL genotypeeval_1.15.0.zip && rm genotypeeval_1.15.0.tar.gz genotypeeval_1.15.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 399k 100 399k 0 0 1503k 0 --:--:-- --:--:-- --:--:-- 1541k install for i386 * installing *source* package 'genotypeeval' ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'genotypeeval' finding HTML links ... done GoldData-class html GoldDataFromGRanges html GoldDataParam-class html GoldDataParam html ReadGoldData html ReadVCFData html ReadVCFDataChunk html VCFData-class html VCFEvaluate html VCFQAParam-class html VCFQAParam html VCFQAReport-class html XHeterozygosity html admixture html callbyChrPlot html calltypePlot html chunkData html computeTiTv html didSamplePass html didSamplePassOverall html genotypeQualityPlot html getCoefs html getDescriptors html getName html getPlots html getResults html getVR html goldCompare html hetGap html hetsMasked html homrefPlot html meanGQ html myf html numberCalls html numberOfHets html numberOfHomRefs html numberOfHomVars html percentHets html percentInTarget html rareCompare html readDepth html readVcfGold html readdepthPlot html reformatData html titv html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'genotypeeval' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'genotypeeval' as genotypeeval_1.15.0.zip * DONE (genotypeeval) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'genotypeeval' successfully unpacked and MD5 sums checked