| Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:27:09 -0400 (Tue, 09 Apr 2019).
| Package 567/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowQB 2.11.1 Josef Spidlen
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | OK | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
| Package: flowQB |
| Version: 2.11.1 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowQB.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowQB_2.11.1.tar.gz |
| StartedAt: 2019-04-09 00:55:22 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 01:09:20 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 838.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: flowQB.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowQB.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowQB_2.11.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/flowQB.Rcheck’
* using R Under development (unstable) (2018-11-27 r75683)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowQB/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowQB’ version ‘2.11.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowQB’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fit_beads 334.203 11.730 348.144
fit_led 14.924 2.360 17.015
qb_from_fits 13.931 2.277 16.187
calc_mean_sd_197 8.013 0.890 7.037
calc_mean_sd_capture_all 5.862 0.784 6.193
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
flowQB.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL flowQB ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘flowQB’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (flowQB)
flowQB.Rcheck/tests/runTests.Rout
R Under development (unstable) (2018-11-27 r75683) -- "Unsuffered Consequences"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("flowQB")
RUNIT TEST PROTOCOL -- Tue Apr 9 01:09:15 2019
***********************************************
Number of test functions: 19
Number of errors: 0
Number of failures: 0
1 Test Suite :
flowQB RUnit Tests - 19 test functions, 0 errors, 0 failures
Number of test functions: 19
Number of errors: 0
Number of failures: 0
Warning messages:
1: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
2: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
3: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
4: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
5: Quick-TRANSfer stage steps exceeded maximum (= 3709000)
>
> proc.time()
user system elapsed
337.921 15.357 351.483
flowQB.Rcheck/flowQB-Ex.timings
| name | user | system | elapsed | |
| calc_mean_sd_197 | 8.013 | 0.890 | 7.037 | |
| calc_mean_sd_background | 3.382 | 0.373 | 2.774 | |
| calc_mean_sd_capture | 0.326 | 0.058 | 0.383 | |
| calc_mean_sd_capture_all | 5.862 | 0.784 | 6.193 | |
| calc_mean_sd_duke | 2.813 | 0.290 | 2.593 | |
| find_peak | 0.002 | 0.000 | 0.002 | |
| fit_beads | 334.203 | 11.730 | 348.144 | |
| fit_led | 14.924 | 2.360 | 17.015 | |
| fitted_ellipse_gate | 0.908 | 0.283 | 1.199 | |
| get_results_for_dyes | 2.316 | 0.320 | 2.385 | |
| peak_gate-methods | 0.992 | 0.264 | 1.256 | |
| pick_parameters-methods | 0.658 | 0.148 | 0.807 | |
| qb_from_fits | 13.931 | 2.277 | 16.187 | |
| split_in_two-methods | 0.645 | 0.165 | 0.814 | |