Package: drawProteins

Version: 1.3.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:drawProteins.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings drawProteins_1.3.0.tar.gz

StartedAt: 2019-04-09 00:13:09 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 00:13:50 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 41.4 seconds

RetCode: 0

Status:  OK

CheckDir: drawProteins.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:drawProteins.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings drawProteins_1.3.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/drawProteins.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘drawProteins/DESCRIPTION’ ... OK
* this is package ‘drawProteins’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘drawProteins’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘stringr’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.9-bioc/meat/drawProteins.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL drawProteins
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘drawProteins’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (drawProteins)

R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(drawProteins)
> 
> test_check("drawProteins")
[1] "Download has worked"
[1] "An error has occured. Code: 400"
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 183 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  2.507   0.082   3.846 

name	user	system	elapsed
draw_canvas	0.338	0.016	0.354
draw_chains	0.787	0.000	0.791
draw_domains	0.438	0.000	0.438
draw_folding	0.692	0.000	0.692
draw_motif	0.219	0.000	0.219
draw_phospho	0.15	0.00	0.15
draw_recept_dom	0.296	0.000	0.296
draw_regions	0.273	0.000	0.273
draw_repeat	0.17	0.00	0.17
extract_feat_acc	0.031	0.004	0.035
extract_names	0.007	0.000	0.007
extract_transcripts	0.017	0.000	0.017
feature_to_dataframe	0.037	0.008	0.045
get_features	0.312	0.008	1.147
parse_gff	0.253	0.016	0.695
phospho_site_info	0.007	0.000	0.007