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BUILD report for deepSNV on tokay2

This page was generated on 2019-04-09 12:00:14 -0400 (Tue, 09 Apr 2019).

Package 398/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
deepSNV 1.29.1
Moritz Gerstung
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/deepSNV
Branch: master
Last Commit: c24823b
Last Changed Date: 2019-03-14 12:36:53 -0400 (Thu, 14 Mar 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: deepSNV
Version: 1.29.1
Command: chmod a+r deepSNV -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data deepSNV
StartedAt: 2019-04-08 21:40:46 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 21:47:42 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 416.0 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   chmod a+r deepSNV -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data deepSNV
###
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* checking for file 'deepSNV/DESCRIPTION' ... OK
* preparing 'deepSNV':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'shearwaterML.Rmd' using rmarkdown
Quitting from lines 35-39 (shearwaterML.Rmd) 
Error: processing vignette 'shearwaterML.Rmd' failed with diagnostics:
invalid class "VCFHeader" object: 1: 'info(VCFHeader)' must be a 3 column DataFrame with names Number, Type, Description
invalid class "VCFHeader" object: 2: 'geno(VCFHeader)' must be a 3 column DataFrame with names Number, Type, Description
--- failed re-building 'shearwaterML.Rmd'

--- re-building 'deepSNV.Rnw' using knitr
--- finished re-building 'deepSNV.Rnw'

--- re-building 'shearwater.Rnw' using knitr
Quitting from lines 348-353 (shearwater.Rnw) 
Error: processing vignette 'shearwater.Rnw' failed with diagnostics:
invalid class "VCFHeader" object: 1: 'info(VCFHeader)' must be a 3 column DataFrame with names Number, Type, Description
invalid class "VCFHeader" object: 2: 'geno(VCFHeader)' must be a 3 column DataFrame with names Number, Type, Description
--- failed re-building 'shearwater.Rnw'

SUMMARY: processing the following files failed:
  'shearwaterML.Rmd' 'shearwater.Rnw'

Error: Vignette re-building failed.
Execution halted