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CHECK report for debrowser on celaya2

This page was generated on 2019-04-09 13:15:51 -0400 (Tue, 09 Apr 2019).

Package 389/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
debrowser 1.11.9
Alper Kucukural
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/debrowser
Branch: master
Last Commit: c1f5ba1
Last Changed Date: 2019-02-02 22:03:33 -0400 (Sat, 02 Feb 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: debrowser
Version: 1.11.9
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:debrowser.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings debrowser_1.11.9.tar.gz
StartedAt: 2019-04-09 01:11:24 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 01:20:56 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 572.2 seconds
RetCode: 0
Status:  OK 
CheckDir: debrowser.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:debrowser.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings debrowser_1.11.9.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/debrowser.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘debrowser/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘debrowser’ version ‘1.11.9’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘debrowser’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
checkCountData : <anonymous>: no visible binding for global variable
  ‘err’
debrowserdataload: no visible binding for global variable ‘demodata’
getDensityPlot: no visible binding for global variable ‘samples’
getMean: no visible binding for global variable ‘norm_data’
plot_pca: no visible binding for global variable ‘x’
plot_pca: no visible binding for global variable ‘y’
plot_pca: no visible binding for global variable ‘samples’
Undefined global functions or variables:
  demodata err norm_data samples x y
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-demo.R’
  Running ‘test-deseq.R’
  Running ‘test-null.R’
  Running ‘test-ui.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.9-bioc/meat/debrowser.Rcheck/00check.log’
for details.

Installation output

debrowser.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL debrowser
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘debrowser’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (debrowser)

Tests output

debrowser.Rcheck/tests/test-demo.Rout


R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require(shiny)
Loading required package: shiny
> library(debrowser)



##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
DEBrowser v1.11.9  For help: https://debrowser.readthedocs.org/

If you use DEBrowser in published research, please cite:

Alper Kucukural, Onur Yukselen, Deniz M. Ozata, Melissa J. Moore, Manuel Garber
DEBrowser: Interactive Differential Expression Analysis and Visualization Tool for Count Data
BMC Genomics 2019 20:6

doi:0.1186/s12864-018-5362-x

> library(testthat)
> 
> test_that("demo data can be loaded", {
+     load(system.file("extdata", "demo", "demodata.Rda",
+         package = "debrowser"))
+     expect_true(is.data.frame(demodata))
+     expect_equal(demodata[29311, 2], 2)
+     expect_equal(demodata[29311, 5], 7.1)
+     expect_equal(demodata[29311, 6], 6)
+     expect_null(demodata[1, 7])
+ })
> 
> proc.time()
   user  system elapsed 
 20.141   1.912  22.009

debrowser.Rcheck/tests/test-deseq.Rout


R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(debrowser)



##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
DEBrowser v1.11.9  For help: https://debrowser.readthedocs.org/

If you use DEBrowser in published research, please cite:

Alper Kucukural, Onur Yukselen, Deniz M. Ozata, Melissa J. Moore, Manuel Garber
DEBrowser: Interactive Differential Expression Analysis and Visualization Tool for Count Data
BMC Genomics 2019 20:6

doi:0.1186/s12864-018-5362-x

> library(testthat)
> 
> load(system.file("extdata", "demo", "demodata.Rda",
+     package = "debrowser"))
> columns <- c("exper_rep1", "exper_rep2", "exper_rep3",
+     "control_rep1", "control_rep2", "control_rep3")
> conds <- factor( c("Control", "Control", "Control",
+     "Treat", "Treat", "Treat") )
> data <- data.frame(demodata[, columns])
> params <-
+         #Run DESeq2 with the following parameters
+         c("DESeq2", "parametric", F, "Wald") 
> non_expressed_cutoff <- 10
> data <- subset(data, rowSums(data) > 10)
> test_that("Able to run DESeq2", {
+     deseqrun <- runDE(data, columns, conds, params)
+     expect_true(exists("deseqrun"))
+ })
> 
> ##################################################
> deseqrun <- runDE(data, columns, conds, params)
estimating size factors
estimating dispersions
gene-wise dispersion estimates
mean-dispersion relationship
final dispersion estimates
fitting model and testing
> 
> de_res <- data.frame(deseqrun)
> norm_data <- getNormalizedMatrix(data[, columns])
> rdata <- cbind(rownames(de_res), norm_data[rownames(de_res), columns],
+                 log10(rowMeans(norm_data[rownames(de_res),
+                 paste(c("exper_rep1", "exper_rep2", "exper_rep3"))])
+                 + 0.1), log10( rowMeans( norm_data[ rownames( de_res ),
+                 paste(c("control_rep1", "control_rep2", "control_rep3"))])
+                 + 0.1), de_res[rownames(de_res),
+                 c("padj", "log2FoldChange")], 2 ^ de_res[rownames(de_res),
+                 "log2FoldChange"], -1 *
+                 log10(de_res[rownames(de_res), "padj"]))
> colnames(rdata) <- c("ID", columns, "Cond1", "Cond2", "padj",
+                 "log2FoldChange", "foldChange", "log10padj")
> rdata <- as.data.frame(rdata)
> rdata$padj[is.na(rdata$padj)] <- 1
> 
> padj_cutoff <- 0.01
> foldChange_cutoff <- 2
> 
> rdata$Legend <- character(nrow(rdata))
> rdata$Legend[rdata$log2FoldChange > log2(foldChange_cutoff) &
+         rdata$padj < padj_cutoff] <- "Up"
> rdata$Legend[rdata$log2FoldChange < log2(1 / foldChange_cutoff) &
+         rdata$padj < padj_cutoff] <- "Down"
> rdata$Legend[abs(rdata$log2FoldChange) <= 
+         log2(foldChange_cutoff)] <- "NS"
> rdata$Legend[is.null(rdata$log10padj)] <- "NA"
> rdata$Size <- character(nrow(rdata))
> rdata[, "Size"] <- "40"
> 
> dat <- rdata
> dat$M <- rdata$Cond1 - rdata$Cond2
> dat$A <- (rdata$Cond1 + rdata$Cond2) / 2
> 
> updown <- rdata[rdata$Legend=="Up" | rdata$Legend=="Down",columns]
> ##################################################
> 
> test_that("Check the QC plots", {
+     expect_silent( all2all(data) )
+ })
> 
> 
> proc.time()
   user  system elapsed 
 53.971   3.163  57.159

debrowser.Rcheck/tests/test-null.Rout


R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require(shiny)
Loading required package: shiny
> library(debrowser)



##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
DEBrowser v1.11.9  For help: https://debrowser.readthedocs.org/

If you use DEBrowser in published research, please cite:

Alper Kucukural, Onur Yukselen, Deniz M. Ozata, Melissa J. Moore, Manuel Garber
DEBrowser: Interactive Differential Expression Analysis and Visualization Tool for Count Data
BMC Genomics 2019 20:6

doi:0.1186/s12864-018-5362-x

> library(testthat)
> 
> test_that("passing no data returns NULL", {
+     expect_null(compareClust() )
+     expect_null(getGOPlots(NULL, NULL))
+     null_deseq <- runDE(NULL)
+     expect_null(null_deseq)
+     expect_null(plot_pca(NULL))
+ })
> 
> proc.time()
   user  system elapsed 
 19.800   1.905  21.655

debrowser.Rcheck/tests/test-ui.Rout


R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require(shiny)
Loading required package: shiny
> library(debrowser)



##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
DEBrowser v1.11.9  For help: https://debrowser.readthedocs.org/

If you use DEBrowser in published research, please cite:

Alper Kucukural, Onur Yukselen, Deniz M. Ozata, Melissa J. Moore, Manuel Garber
DEBrowser: Interactive Differential Expression Analysis and Visualization Tool for Count Data
BMC Genomics 2019 20:6

doi:0.1186/s12864-018-5362-x

> library(testthat)
> 
> test_that("able to create panel UI", {
+     expect_silent( QCPanel <- getQCPanel() )
+     expect_true(exists("QCPanel"))
+     expect_equal(QCPanel[[1]][[1]], "div")
+ 
+     expect_silent( downloads <- getDownloadSection() )
+     expect_true(exists("downloads"))
+     expect_equal(downloads[[1]][[1]], "div")
+ 
+     expect_silent( getMain <- getMainPanel() )
+     expect_true(exists("getMain"))
+     expect_equal(getMain[[1]][[1]], "div")
+ 
+     expect_silent( getStart <- getStartupMsg() )
+     expect_true(exists("getStart"))
+     expect_equal(getStart[[1]][[1]], "div")
+ 
+     expect_silent( getAfter <- getAfterLoadMsg() )
+     expect_true(exists("getAfter"))
+     expect_equal(getAfter[[1]][[1]], "div")
+ 
+     expect_silent(getGO <- getGoPanel() )
+     expect_true(exists("getGO"))
+     expect_equal(getGO[[1]][[1]], "div")
+ })
> 
> proc.time()
   user  system elapsed 
 21.049   2.071  26.411

Example timings

debrowser.Rcheck/debrowser-Ex.timings

nameusersystemelapsed
BoxMainPlotControlsUI0.0050.0000.005
IQRPlotControlsUI0.0010.0000.001
actionButtonDE0.0050.0010.007
addDataCols0.0000.0010.001
addID0.0000.0000.001
all2all0.1970.0040.202
all2allControlsUI0.0040.0000.004
applyFilters0.0000.0010.001
applyFiltersNew000
applyFiltersToMergedComparison0.0010.0010.001
barMainPlotControlsUI0.0010.0000.002
batchEffectUI0.1080.0160.126
batchMethod0.0050.0010.007
changeClusterOrder0.0010.0000.001
checkCountData0.0010.0000.001
checkMetaData0.0010.0010.002
clustFunParamsUI0.0000.0010.000
clusterData0.0010.0000.001
compareClust0.0010.0000.001
condSelectUI0.0090.0010.011
correctCombat0.0010.0010.000
correctHarman0.0010.0010.001
customColorsUI0.0110.0020.014
cutOffSelectionUI0.0060.0020.009
dataLCFUI0.0420.0070.049
dataLoadUI0.0270.0070.035
deServer0.0120.0020.015
deUI1.3700.2321.709
debrowserIQRplot0.0010.0000.001
debrowserall2all0.0010.0000.001
debrowserbarmainplot0.0010.0010.001
debrowserbatcheffect0.0000.0000.001
debrowserboxmainplot0.0010.0000.000
debrowsercondselect0.0010.0000.001
debrowserdataload0.0010.0000.002
debrowserdeanalysis0.0010.0000.000
debrowserdensityplot0.0000.0010.001
debrowserheatmap0.0000.0000.001
debrowserhistogram0.0000.0000.001
debrowserlowcountfilter0.0010.0010.001
debrowsermainplot0.1870.0020.189
debrowserpcaplot0.0000.0010.001
dendControlsUI0.0150.0020.017
densityPlotControlsUI0.0020.0000.002
distFunParamsUI0.0010.0000.001
drawKEGG0.0000.0010.001
drawPCAExplained0.0000.0000.001
fileTypes000
fileUploadBox0.0060.0020.009
generateTestData0.0010.0000.001
getAfterLoadMsg0.0010.0000.001
getAll2AllPlotUI0.0000.0010.001
getBSTableUI0.0010.0000.000
getBarMainPlot0.0010.0000.001
getBarMainPlotUI0.0010.0000.000
getBoxMainPlot0.0000.0000.001
getBoxMainPlotUI0.0000.0000.001
getColorShapeSelection0.0010.0000.001
getColors0.0010.0010.001
getCompSelection0.0050.0010.007
getCondMsg0.0010.0000.001
getConditionSelector0.0010.0000.001
getConditionSelectorFromMeta0.0050.0020.007
getCutOffSelection0.0020.0010.002
getDEAnalysisText0.0030.0000.003
getDEResultsUI0.0020.0000.003
getDataAssesmentText0.0020.0000.002
getDataForTables0.0000.0010.000
getDataPreparationText0.0010.0000.002
getDensityPlot0.0000.0000.001
getDensityPlotUI0.0000.0010.000
getDomains0.0010.0000.001
getDown0.0000.0000.001
getDownloadSection0.0150.0040.020
getEnrichDO0.0000.0010.001
getEnrichGO000
getEnrichKEGG0.0000.0000.001
getEntrezIds0.0010.0010.001
getEntrezTable0.0010.0000.001
getGOLeftMenu0.0190.0040.025
getGOPlots0.0010.0000.001
getGeneList1.8250.1171.943
getGeneSetData000
getGoPanel0.0270.0040.031
getHeatmapUI0.0000.0000.001
getHelpButton0.0000.0010.001
getHideLegendOnOff0.0050.0010.006
getHistogramUI0.0010.0000.001
getIQRPlot0.0010.0010.001
getIQRPlotUI0.0000.0000.001
getIntroText0.0010.0000.001
getJSLine0.0080.0020.009
getKEGGModal0.0020.0000.002
getLeftMenu0.0010.0010.000
getLegendColors0.0010.0000.001
getLegendRadio0.0040.0030.008
getLegendSelect0.0040.0010.006
getLevelOrder0.0000.0000.001
getLoadingMsg0.0020.0010.003
getLogo0.0020.0010.002
getMainPanel0.0010.0000.002
getMainPlotUI0.0010.0000.001
getMainPlotsLeftMenu0.0870.0100.100
getMean0.0000.0000.001
getMergedComparison000
getMetaSelector0.0000.0000.001
getMethodDetails0.0010.0000.001
getMostVariedList000
getNormalizedMatrix0.0190.0010.020
getOrganism0.0000.0000.001
getOrganismBox0.0050.0010.007
getOrganismPathway0.0010.0000.000
getPCAPlotUI0.0010.0000.001
getPCAcontolUpdatesJS0.0010.0000.001
getPCAexplained3.0080.4023.411
getPCselection0.0010.0000.001
getPlotArea0.0000.0010.001
getProgramTitle0.0000.0010.000
getQAText0.0020.0000.003
getQCLeftMenu0.0000.0000.001
getQCPanel0.0050.0010.007
getSampleDetails0.0010.0000.001
getSampleNames000
getSamples0.0010.0010.000
getSearchData0.0010.0000.001
getSelHeat000
getSelectInputBox0.0000.0000.001
getSelectedCols0.0010.0010.001
getSelectedDatasetInput0.0010.0010.001
getShapeColor0.0010.0010.000
getStartPlotsMsg0.0050.0010.006
getStartupMsg0.0040.0010.006
getTabUpdateJS0.0010.0000.000
getTableDetails0.0010.0000.001
getTableModal0.0160.0030.018
getTableStyle0.0010.0000.000
getTextOnOff0.0050.0010.007
getUp0.0010.0000.001
getUpDown0.0000.0000.001
getVariationData0.0000.0010.001
get_conditions_given_selection0.0000.0010.001
heatmapControlsUI0.0710.0210.094
heatmapJScode0.0010.0000.001
heatmapServer0.0020.0000.003
heatmapUI0.1340.0400.178
hideObj0.0000.0010.001
histogramControlsUI0.0000.0000.001
installpack0.0010.0000.000
kmeansControlsUI0.0100.0030.012
lcfMetRadio0.0040.0030.007
loadpack0.0320.0370.069
mainPlotControlsUI0.0100.0040.015
mainScatterNew0.0010.0000.001
niceKmeans0.0010.0000.001
normalizationMethods0.0060.0010.007
palUI0.0060.0030.010
panel.cor0.0010.0000.002
panel.hist0.0010.0000.002
pcaPlotControlsUI0.0160.0060.022
plotData0.0010.0010.001
plotMarginsUI0.0070.0010.007
plotSizeMarginsUI0.0110.0020.014
plotSizeUI0.0040.0000.005
plot_pca2.2660.1692.461
prepDEOutput0.0010.0010.000
prepDataContainer0.0010.0000.001
prepGroup0.0010.0000.001
prepHeatData0.0000.0010.000
prepPCADat0.0000.0000.001
push0.0010.0000.001
removeCols0.0000.0010.000
removeExtraCols0.0020.0000.003
round_vals0.0000.0000.001
runDE0.0010.0000.001
runDESeq20.0000.0000.001
runEdgeR0.0010.0000.001
runHeatmap0.0010.0000.002
runHeatmap20.0010.0010.001
runLimma0.0010.0000.001
run_pca1.9660.1792.146
selectConditions0.0000.0010.001
selectGroupInfo000
selectedInput000
sepRadio0.0040.0040.008
setBatch0.0010.0000.001
showObj0.0000.0000.001
startDEBrowser0.0010.0000.001
startHeatmap0.0010.0000.001
textareaInput0.0010.0000.001
togglePanels0.0000.0000.001