Michael Skinnider
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/PrInCE |
| Branch: master |
| Last Commit: 017fd69 |
| Last Changed Date: 2019-03-12 19:10:59 -0400 (Tue, 12 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:21:56 -0400 (Tue, 09 Apr 2019).
| Package 1223/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PrInCE 0.99.13 Michael Skinnider
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: PrInCE |
| Version: 0.99.13 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PrInCE.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PrInCE_0.99.13.tar.gz |
| StartedAt: 2019-04-09 04:32:18 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 04:36:53 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 274.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PrInCE.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PrInCE.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PrInCE_0.99.13.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/PrInCE.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PrInCE/DESCRIPTION’ ... OK
* this is package ‘PrInCE’ version ‘0.99.13’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PrInCE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
predict_ensemble 8.383 0.853 9.235
calculate_precision 7.725 0.889 8.614
predict_interactions 7.698 0.766 8.463
threshold_precision 6.859 0.716 7.574
PrInCE 6.858 0.717 7.575
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PrInCE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PrInCE ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘PrInCE’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help Loading required namespace: PrInCE Registered S3 methods overwritten by 'ggplot2': method from [.quosures rlang c.quosures rlang print.quosures rlang Registered S3 method overwritten by 'xts': method from as.zoo.xts zoo Registered S3 method overwritten by 'quantmod': method from as.zoo.data.frame zoo Registered S3 methods overwritten by 'forecast': method from fitted.fracdiff fracdiff residuals.fracdiff fracdiff *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PrInCE)
PrInCE.Rcheck/PrInCE-Ex.timings
| name | user | system | elapsed | |
| PrInCE | 6.858 | 0.717 | 7.575 | |
| adjacency_matrix_from_data_frame | 0.002 | 0.000 | 0.002 | |
| adjacency_matrix_from_list | 1.628 | 0.137 | 1.765 | |
| build_gaussians | 1.168 | 0.104 | 1.272 | |
| calculate_precision | 7.725 | 0.889 | 8.614 | |
| check_gaussians | 0.220 | 0.009 | 0.228 | |
| choose_gaussians | 0.344 | 0.007 | 0.351 | |
| clean_profile | 0.079 | 0.003 | 0.081 | |
| clean_profiles | 0.091 | 0.003 | 0.094 | |
| co_apex | 0.179 | 0.005 | 0.185 | |
| detect_complexes | 0.135 | 0.006 | 0.141 | |
| filter_profiles | 0.439 | 0.033 | 0.472 | |
| fit_curve | 0.388 | 0.022 | 0.411 | |
| fit_gaussians | 0.322 | 0.004 | 0.326 | |
| impute_neighbors | 0.068 | 0.003 | 0.071 | |
| is_unweighted | 1.624 | 0.088 | 1.711 | |
| is_weighted | 1.470 | 0.054 | 1.524 | |
| make_initial_conditions | 0.048 | 0.002 | 0.050 | |
| make_labels | 1.290 | 0.011 | 1.301 | |
| match_matrix_dimensions | 2.165 | 0.017 | 2.182 | |
| predict_ensemble | 8.383 | 0.853 | 9.235 | |
| predict_interactions | 7.698 | 0.766 | 8.463 | |
| threshold_precision | 6.859 | 0.716 | 7.574 | |