Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:45:14 -0400 (Tue, 09 Apr 2019).
Package 1163/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
PCAN 1.11.0 Matthew Page
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: PCAN |
Version: 1.11.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:PCAN.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings PCAN_1.11.0.tar.gz |
StartedAt: 2019-04-09 02:36:43 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 02:40:45 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 241.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PCAN.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:PCAN.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings PCAN_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/PCAN.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PCAN/DESCRIPTION’ ... OK * this is package ‘PCAN’ version ‘1.11.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PCAN’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed compareHPSets 61.688 0.344 62.245 hpGeneListComp 57.175 0.268 57.472 hpGeneHeatmap 54.943 0.528 55.491 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
PCAN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL PCAN ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘PCAN’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PCAN)
PCAN.Rcheck/PCAN-Ex.timings
name | user | system | elapsed | |
calcHpSim | 2.122 | 0.048 | 2.185 | |
compareHPSets | 61.688 | 0.344 | 62.245 | |
computeHpIC | 2.489 | 0.020 | 2.515 | |
geneByHp | 2.452 | 0.028 | 2.483 | |
geneByTrait | 0.059 | 0.004 | 0.064 | |
geneDef | 3.537 | 0.044 | 3.593 | |
hpByTrait | 2.680 | 0.044 | 2.727 | |
hpDef | 2.323 | 0.063 | 2.394 | |
hpGeneHeatmap | 54.943 | 0.528 | 55.491 | |
hpGeneListComp | 57.175 | 0.268 | 57.472 | |
hpSetCompBestMatch | 2.317 | 0.012 | 2.329 | |
hpSetCompSummary | 3.748 | 0.024 | 3.772 | |
hp_ancestors | 2.858 | 0.088 | 2.947 | |
hp_class | 0.064 | 0.000 | 0.064 | |
hp_descendants | 2.369 | 0.020 | 2.390 | |
hqStrNw | 0.001 | 0.000 | 0.000 | |
hsEntrezByRPath | 0.001 | 0.000 | 0.000 | |
rPath | 0 | 0 | 0 | |
traitDef | 2.927 | 0.038 | 2.966 | |