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INSTALL report for OVESEG on tokay2

This page was generated on 2019-04-09 12:43:45 -0400 (Tue, 09 Apr 2019).

Package 1135/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OVESEG 0.99.2
Lulu Chen
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/OVESEG
Branch: master
Last Commit: 4867689
Last Changed Date: 2019-01-14 17:14:10 -0400 (Mon, 14 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: OVESEG
Version: 0.99.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/OVESEG_0.99.2.tar.gz && rm -rf OVESEG.buildbin-libdir && mkdir OVESEG.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OVESEG.buildbin-libdir OVESEG_0.99.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL OVESEG_0.99.2.zip && rm OVESEG_0.99.2.tar.gz OVESEG_0.99.2.zip
StartedAt: 2019-04-08 19:50:10 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:51:50 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 99.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/OVESEG_0.99.2.tar.gz && rm -rf OVESEG.buildbin-libdir && mkdir OVESEG.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OVESEG.buildbin-libdir OVESEG_0.99.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL OVESEG_0.99.2.zip && rm OVESEG_0.99.2.tar.gz OVESEG_0.99.2.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100  527k  100  527k    0     0  7453k      0 --:--:-- --:--:-- --:--:-- 8372k

install for i386

* installing *source* package 'OVESEG' ...
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c pairwise_tstat_unscaled.cpp -o pairwise_tstat_unscaled.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c row_min.cpp -o row_min.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c row_which_max.cpp -o row_which_max.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c shuffle_topm.cpp -o shuffle_topm.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o OVESEG.dll tmp.def RcppExports.o pairwise_tstat_unscaled.o row_min.o row_which_max.o shuffle_topm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/OVESEG.buildbin-libdir/00LOCK-OVESEG/00new/OVESEG/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'OVESEG'
    finding HTML links ... done
    OVESEG-package                          html  
    OVESEGtest                              html  
    OVESEGtstat                             html  
    OVEtstatPermTopM                        html  
    RocheBT                                 html  
    countBT                                 html  
    nullDistri                              html  
    pairwise_tstat_unscaled                 html  
    patternDistri                           html  
    permfunc                                html  
    postProbNull                            html  
    pvalueWeightedEst                       html  
    row_min                                 html  
    row_which_max                           html  
    shuffle_topm                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'OVESEG' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c pairwise_tstat_unscaled.cpp -o pairwise_tstat_unscaled.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c row_min.cpp -o row_min.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c row_which_max.cpp -o row_which_max.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c shuffle_topm.cpp -o shuffle_topm.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o OVESEG.dll tmp.def RcppExports.o pairwise_tstat_unscaled.o row_min.o row_which_max.o shuffle_topm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/OVESEG.buildbin-libdir/OVESEG/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OVESEG' as OVESEG_0.99.2.zip
* DONE (OVESEG)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'OVESEG' successfully unpacked and MD5 sums checked