Ji-Ping Wang
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/NuPoP |
| Branch: master |
| Last Commit: 1f068cc |
| Last Changed Date: 2018-10-30 11:54:29 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:59:21 -0400 (Tue, 09 Apr 2019).
| Package 1096/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| NuPoP 1.33.0 Ji-Ping Wang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: NuPoP |
| Version: 1.33.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL NuPoP |
| StartedAt: 2019-04-08 18:00:38 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 18:00:59 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 20.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL NuPoP
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘NuPoP’ ...
** using staged installation
** libs
gfortran -fPIC -Wall -g -O2 -c vtbfb.f90 -o vtbfb.o
vtbfb.f90:13:32:
character*80 seqName,out1,out2; character*2 tpc
1
Warning: Unused variable ‘out2’ declared at (1) [-Wunused-variable]
gfortran -fPIC -Wall -g -O2 -c vtbfbNL4.f90 -o vtbfbNL4.o
vtbfbNL4.f90:257:106:
if(d>=3) temp=temp*tranL2(w(t-d+1),w(t-d+2),w(t-d+3))*tranL2(c(z-t+1),c(z-t+2),c(z-t+3))/r(t-d+2)
1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:272:13:
end if
1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:301:107:
if(d>=3) temp=temp*tranL2(w(t-d+1),w(t-d+2),w(t-d+3))*tranL2(c(z-t+1),c(z-t+2),c(z-t+3))/ra(t-d+2)
1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:314:23:
tempL=tempL+temp
1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:335:87:
if(z-t>=3) rb(t)=rb(t)*tranL2(w(t+1),w(t+2),w(t+3))*tranL2(c(1),c(2),c(3))/rb(t+2)
1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:364:105:
if(d>=3) temp=temp*tranL2(w(t+1),w(t+2),w(t+3))*tranL2(c(z-t-d+1),c(z-t-d+2),c(z-t-d+3))/rb(t+2)
1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:15:32:
character*80 seqName,out1,out2; character*2 tpc
1
Warning: Unused variable ‘out2’ declared at (1) [-Wunused-variable]
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o NuPoP.so vtbfb.o vtbfbNL4.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-NuPoP/00new/NuPoP/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NuPoP)